Gene Gene information from NCBI Gene database.
Entrez ID 51633
Gene name OTU deubiquitinase 6B
Gene symbol OTUD6B
Synonyms (NCBI Gene)
CGI-77DUBA-5DUBA5IDDFSDA
Chromosome 8
Chromosome location 8q21.3
Summary This gene encodes a member of the ovarian tumor domain (OTU)-containing subfamily of deubiquitinating enzymes. Deubiquitinating enzymes are primarily involved in removing ubiquitin from proteins targeted for degradation. This protein may function as a neg
SNPs SNP information provided by dbSNP.
5
SNP ID Visualize variation Clinical significance Consequence
rs150848976 T>C Likely-pathogenic Coding sequence variant, missense variant
rs368313959 C>T Pathogenic Stop gained, coding sequence variant
rs747009288 G>A,C Pathogenic Splice donor variant
rs759317757 TTAAC>- Pathogenic Frameshift variant, coding sequence variant
rs1064797103 A>G Likely-pathogenic, pathogenic Missense variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
174
miRTarBase ID miRNA Experiments Reference
MIRT1208011 hsa-miR-1179 CLIP-seq
MIRT1208012 hsa-miR-1283 CLIP-seq
MIRT1208013 hsa-miR-196a CLIP-seq
MIRT1208014 hsa-miR-196b CLIP-seq
MIRT1208015 hsa-miR-199a-3p CLIP-seq
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
16
GO ID Ontology Definition Evidence Reference
GO:0004843 Function Cysteine-type deubiquitinase activity IBA
GO:0004843 Function Cysteine-type deubiquitinase activity IDA 21267069
GO:0004843 Function Cysteine-type deubiquitinase activity IEA
GO:0005515 Function Protein binding IPI 28514442, 33421002, 33961781
GO:0006508 Process Proteolysis IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
612021 24281 ENSG00000155100
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q8N6M0
Protein name Deubiquitinase OTUD6B (EC 3.4.19.12) (DUBA-5) (OTU domain-containing protein 6B)
Protein function [Isoform 1]: Deubiquitinating enzyme that may play a role in the ubiquitin-dependent regulation of protein synthesis, downstream of mTORC1 (PubMed:21267069, PubMed:27864334). May associate with the protein synthesis initiation complex and modify
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF02338 OTU 153 278 OTU-like cysteine protease Family
Sequence
MEAVLTEELDEEEQLLRRHRKEKKELQAKIQGMKNAVPKNDKKRRKQLTEDVAKLEKEME
QKHREELEQLKLTTKENKIDSVAVNISNLVLENQPPRISKAQKRREKKAALEKEREERIA
EAEIENLTGARHMESEKLAQILAARQLEIKQIPSDGHCMYKAIEDQLKEKDCALTVVALR
SQTAEYMQSHVEDFLPFLTNPNTGDMYTPEEFQKYCEDIVNTAAWGGQLELRALSHILQT
PIEIIQADSPPIIVGEEYSKKPLILVYMRHAYGLGEHY
NSVTRLVNIVTENCS
Sequence length 293
Interactions View interactions
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
10
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Colorectal cancer Pathogenic rs368313959 RCV005900715
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Dysmorphic features Pathogenic; Likely pathogenic rs368313959, rs759317757, rs1064797102, rs1064797103 RCV000491014
RCV000491466
RCV000491932
RCV000490986
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Epilepsy Pathogenic; Likely pathogenic rs368313959, rs759317757, rs1064797102, rs1064797103 RCV000491014
RCV000491466
RCV000491932
RCV000490986
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Intellectual developmental disorder with dysmorphic facies, seizures, and distal limb anomalies Pathogenic; Likely pathogenic rs772032719, rs767217536, rs748735420, rs1472577530, rs2130446714, rs2488421311, rs2488421245, rs368313959, rs759317757, rs1064797102, rs1064797103, rs150848976, rs779499353 RCV001330700
RCV001782559
RCV001807975
RCV002266033
RCV002266034
View all (8 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
Acute myeloid leukemia Conflicting classifications of pathogenicity ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
EARLY-ONSET SEIZURES, DISTAL LIMB ANOMALIES, FACIAL DYSMORPHISM, GLOBAL DEVELOPMENTAL DELAY SYNDROME Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
EARLY-ONSET SEIZURES-DISTAL LIMB ANOMALIES-FACIAL DYSMORPHISM-GLOBAL DEVELOPMENTAL DELAY SYNDROME Orphanet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
OTUD6B-related disorder Conflicting classifications of pathogenicity; Uncertain significance; Likely benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Arachnodactyly Arachnodactyly HPO_DG
★☆☆☆☆
Found in Text Mining only
Atrial Septal Defects Atrial Septal Defect HPO_DG
★☆☆☆☆
Found in Text Mining only
Autistic behavior Autism HPO_DG
★☆☆☆☆
Found in Text Mining only
Brachycephaly Brachycephaly HPO_DG
★☆☆☆☆
Found in Text Mining only
Breast Neoplasms Breast neoplasm Pubtator 33225954, 35441740, 37110517 Associate
★☆☆☆☆
Found in Text Mining only
Byzanthine arch palate High palate HPO_DG
★☆☆☆☆
Found in Text Mining only
Byzanthine arch palate High palate CLINVAR_DG
★☆☆☆☆
Found in Text Mining only
Carcinogenesis Carcinogenesis Pubtator 32952848 Associate
★☆☆☆☆
Found in Text Mining only
Carcinoma Renal Cell Renal cell carcinoma Pubtator 32256450 Inhibit
★☆☆☆☆
Found in Text Mining only
Carcinoma Renal Cell Renal cell carcinoma Pubtator 35110537 Associate
★☆☆☆☆
Found in Text Mining only