Gene Gene information from NCBI Gene database.
Entrez ID 51626
Gene name Dynein cytoplasmic 2 light intermediate chain 1
Gene symbol DYNC2LI1
Synonyms (NCBI Gene)
CGI-60D2LICLIC3
Chromosome 2
Chromosome location 2p21
Summary This gene encodes a protein that is a component of the dynein-2 microtubule motor protein complex that plays a role in the retrograde transport of cargo in primary cilia via the intraflagellar transport system. This gene is ubiquitously expressed and its
SNPs SNP information provided by dbSNP.
11
SNP ID Visualize variation Clinical significance Consequence
rs146698690 C>G,T Likely-benign, likely-pathogenic Missense variant, coding sequence variant
rs201151187 G>A Conflicting-interpretations-of-pathogenicity Genic downstream transcript variant, intron variant, splice acceptor variant
rs201948500 C>G Pathogenic Coding sequence variant, missense variant
rs374356079 G>A Pathogenic Splice donor variant, genic downstream transcript variant
rs745930390 C>G,T Pathogenic Missense variant, genic downstream transcript variant, coding sequence variant, stop gained
miRNA miRNA information provided by mirtarbase database.
106
miRTarBase ID miRNA Experiments Reference
MIRT029378 hsa-miR-26b-5p Microarray 19088304
MIRT707579 hsa-miR-4760-3p HITS-CLIP 21572407
MIRT159513 hsa-miR-144-3p HITS-CLIP 21572407
MIRT707578 hsa-miR-128-3p HITS-CLIP 21572407
MIRT707577 hsa-miR-216a-3p HITS-CLIP 21572407
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
44
GO ID Ontology Definition Evidence Reference
GO:0005515 Function Protein binding IPI 21252941, 29742051, 32296183
GO:0005737 Component Cytoplasm IDA 26130459
GO:0005737 Component Cytoplasm IEA
GO:0005794 Component Golgi apparatus IEA
GO:0005813 Component Centrosome IDA 26130459
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
617083 24595 ENSG00000138036
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q8TCX1
Protein name Cytoplasmic dynein 2 light intermediate chain 1 (Dynein 2 light intermediate chain)
Protein function Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 2 complex (dynein-2 complex), a motor protein complex that drives the movement of cargos along microtubules within cilia and flagella in concert with the intrafl
PDB 6RLB , 6SC2 , 8RGH
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF05783 DLIC 2 179 Dynein light intermediate chain (DLIC) Family
Tissue specificity TISSUE SPECIFICITY: Expressed in bone, brain, kidney, and cartilage (PubMed:26077881, PubMed:26130459). Lower expression in heart, liver, lung, placenta and thymus (PubMed:26077881). {ECO:0000269|PubMed:26077881, ECO:0000269|PubMed:26130459}.
Sequence
MPSETLWEIAKAEVEKRGINGSEGDGAEIAEKFVFFIGSKNGGKTTIILRCLDRDEPPKP
TLALEYTYGRRAKGHNTPKDIAHFWELGGGTSLLDLISIPITGDTLRTFSLVLVLDLSKP
NDLWPTMENLLQATKSHVDKVIMKLGKTNAKAVSEMRQKIWNNMPKDHPDHELIDPFPV
P
LVIIGSKYDVFQDFESEKRKVICKTLRFVAHYYGASLMFTSKSEALLLKIRGVINQLAFG
IDKSKSICVDQNKPLFITAGLDSFGQIGSPPVPENDIGKLHAHSPMELWKKVYEKLFPPK
SINTLKDIKDPARDPQYAENEVDEMRIQKDLELEQYKRSSSKSWKQIELDS
Sequence length 351
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Motor proteins
Vasopressin-regulated water reabsorption
Salmonella infection
  Intraflagellar transport
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
37
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Asphyxiating thoracic dystrophy 1 Pathogenic; Likely pathogenic rs201948500, rs769975073, rs374356079, rs879255656, rs879255655 RCV000754096
RCV000754097
RCV000754095
RCV000754099
RCV000754098
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Papillary renal cell carcinoma type 1 Pathogenic rs374356079 RCV005892405
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Short-rib thoracic dysplasia 15 with polydactyly Pathogenic; Likely pathogenic rs1435689952, rs201948500, rs769975073, rs374356079, rs879255656, rs879255655, rs745930390, rs886037860, rs200859699, rs770155116, rs1553359373, rs752971070 RCV001431570
RCV000239697
RCV000239657
RCV000239722
RCV000239617
View all (7 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
Acute myeloid leukemia Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Adrenocortical carcinoma, hereditary Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ASPHYXIATING THORACIC DYSPLASIA JEUNE Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Cervical cancer Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Acquired cubitus valgus Cubitus valgus HPO_DG
★☆☆☆☆
Found in Text Mining only
Acute leukemia Leukemia HPO_DG
★☆☆☆☆
Found in Text Mining only
Aortic coarctation Aortic Coarctation HPO_DG
★☆☆☆☆
Found in Text Mining only
Asphyxiating Thoracic Dystrophy 1 Asphyxiating Thoracic Dystrophy CLINVAR_DG
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Atresia of vagina Atresia Of Vagina HPO_DG
★☆☆☆☆
Found in Text Mining only
Atrial Septal Defects Atrial Septal Defect HPO_DG
★☆☆☆☆
Found in Text Mining only
Brachydactyly Brachydactyly HPO_DG
★☆☆☆☆
Found in Text Mining only
Ciliopathies Ciliopathy Pubtator 33030252 Associate
★☆☆☆☆
Found in Text Mining only
Congenital Epicanthus Congenital Epicanthus HPO_DG
★☆☆☆☆
Found in Text Mining only
Congenital hypoplasia of clavicle Short clavicles HPO_DG
★☆☆☆☆
Found in Text Mining only