Gene Details | GeDiPNet - Complete Gene Info, Disease Associations & Pathways

Gene Gene information from NCBI Gene database. Gene miRNA Gene ontology Other IDs Protein Associated diseases
Entrez ID	51538
Gene name	Zinc finger CCHC-type containing 17
Gene symbol	ZCCHC17
Synonyms (NCBI Gene)	HSPC251PS1DpNO40
Chromosome	1
Chromosome location	1p35.2

109

Show/Hide all (109)

miRTarBase ID	miRNA	Experiments
MIRT1506970	hsa-miR-1229	CLIP-seq
MIRT1506971	hsa-miR-192	CLIP-seq
MIRT1506972	hsa-miR-215	CLIP-seq
MIRT1506973	hsa-miR-29a	CLIP-seq
MIRT1506974	hsa-miR-29b	CLIP-seq
MIRT1506975	hsa-miR-29c	CLIP-seq
MIRT1506976	hsa-miR-3140-3p	CLIP-seq
MIRT1506977	hsa-miR-3153	CLIP-seq
MIRT1506978	hsa-miR-3609	CLIP-seq
MIRT1506979	hsa-miR-3663-3p	CLIP-seq
MIRT1506980	hsa-miR-4269	CLIP-seq
MIRT1506981	hsa-miR-4514	CLIP-seq
MIRT1506982	hsa-miR-4668-5p	CLIP-seq
MIRT1506983	hsa-miR-4692	CLIP-seq
MIRT1506984	hsa-miR-4742-5p	CLIP-seq
MIRT1506985	hsa-miR-548ah	CLIP-seq
MIRT1506986	hsa-miR-548t	CLIP-seq
MIRT2152707	hsa-miR-1287	CLIP-seq
MIRT1506976	hsa-miR-3140-3p	CLIP-seq
MIRT1506980	hsa-miR-4269	CLIP-seq
MIRT1506981	hsa-miR-4514	CLIP-seq
MIRT1506983	hsa-miR-4692	CLIP-seq
MIRT1506984	hsa-miR-4742-5p	CLIP-seq
MIRT2372960	hsa-miR-1205	CLIP-seq
MIRT1506970	hsa-miR-1229	CLIP-seq
MIRT2372961	hsa-miR-1909	CLIP-seq
MIRT1506973	hsa-miR-29a	CLIP-seq
MIRT1506974	hsa-miR-29b	CLIP-seq
MIRT1506975	hsa-miR-29c	CLIP-seq
MIRT1506978	hsa-miR-3609	CLIP-seq
MIRT2372962	hsa-miR-3614-5p	CLIP-seq
MIRT1506979	hsa-miR-3663-3p	CLIP-seq
MIRT2372963	hsa-miR-4433	CLIP-seq
MIRT2372964	hsa-miR-4475	CLIP-seq
MIRT2372965	hsa-miR-518a-5p	CLIP-seq
MIRT2372966	hsa-miR-527	CLIP-seq
MIRT1506985	hsa-miR-548ah	CLIP-seq
MIRT1506986	hsa-miR-548t	CLIP-seq
MIRT2372967	hsa-miR-550b	CLIP-seq
MIRT2372968	hsa-miR-665	CLIP-seq
MIRT2665848	hsa-miR-1	CLIP-seq
MIRT2665849	hsa-miR-1231	CLIP-seq
MIRT2152707	hsa-miR-1287	CLIP-seq
MIRT2665850	hsa-miR-150	CLIP-seq
MIRT2665851	hsa-miR-199a-3p	CLIP-seq
MIRT2665852	hsa-miR-199b-3p	CLIP-seq
MIRT2665853	hsa-miR-206	CLIP-seq
MIRT2665854	hsa-miR-224	CLIP-seq
MIRT2665855	hsa-miR-3120-5p	CLIP-seq
MIRT2665856	hsa-miR-3129-5p	CLIP-seq
MIRT2665857	hsa-miR-3135b	CLIP-seq
MIRT2665858	hsa-miR-3158-5p	CLIP-seq
MIRT2665859	hsa-miR-3166	CLIP-seq
MIRT2665860	hsa-miR-3545-5p	CLIP-seq
MIRT2665861	hsa-miR-3673	CLIP-seq
MIRT2665862	hsa-miR-377	CLIP-seq
MIRT2665863	hsa-miR-3973	CLIP-seq
MIRT2665864	hsa-miR-4276	CLIP-seq
MIRT2665865	hsa-miR-4418	CLIP-seq
MIRT2665866	hsa-miR-4494	CLIP-seq
MIRT2665867	hsa-miR-452	CLIP-seq
MIRT2665868	hsa-miR-4527	CLIP-seq
MIRT2665869	hsa-miR-4676-3p	CLIP-seq
MIRT2665870	hsa-miR-4731-3p	CLIP-seq
MIRT2665871	hsa-miR-4771	CLIP-seq
MIRT2665872	hsa-miR-4773	CLIP-seq
MIRT2665873	hsa-miR-4801	CLIP-seq
MIRT2665874	hsa-miR-509-3-5p	CLIP-seq
MIRT2665875	hsa-miR-509-5p	CLIP-seq
MIRT2665876	hsa-miR-520d-5p	CLIP-seq
MIRT2665877	hsa-miR-524-5p	CLIP-seq
MIRT2665878	hsa-miR-613	CLIP-seq
MIRT2665879	hsa-miR-626	CLIP-seq
MIRT2665880	hsa-miR-639	CLIP-seq
MIRT2665881	hsa-miR-663b	CLIP-seq
MIRT2665848	hsa-miR-1	CLIP-seq
MIRT2665849	hsa-miR-1231	CLIP-seq
MIRT2152707	hsa-miR-1287	CLIP-seq
MIRT2665851	hsa-miR-199a-3p	CLIP-seq
MIRT2665852	hsa-miR-199b-3p	CLIP-seq
MIRT2665853	hsa-miR-206	CLIP-seq
MIRT2665854	hsa-miR-224	CLIP-seq
MIRT2665855	hsa-miR-3120-5p	CLIP-seq
MIRT2665856	hsa-miR-3129-5p	CLIP-seq
MIRT2665857	hsa-miR-3135b	CLIP-seq
MIRT2665858	hsa-miR-3158-5p	CLIP-seq
MIRT2665859	hsa-miR-3166	CLIP-seq
MIRT2665860	hsa-miR-3545-5p	CLIP-seq
MIRT2665861	hsa-miR-3673	CLIP-seq
MIRT2665862	hsa-miR-377	CLIP-seq
MIRT2665863	hsa-miR-3973	CLIP-seq
MIRT2665864	hsa-miR-4276	CLIP-seq
MIRT2665865	hsa-miR-4418	CLIP-seq
MIRT2665866	hsa-miR-4494	CLIP-seq
MIRT2665867	hsa-miR-452	CLIP-seq
MIRT2665868	hsa-miR-4527	CLIP-seq
MIRT2665869	hsa-miR-4676-3p	CLIP-seq
MIRT2665870	hsa-miR-4731-3p	CLIP-seq
MIRT2665871	hsa-miR-4771	CLIP-seq
MIRT2665872	hsa-miR-4773	CLIP-seq
MIRT2665873	hsa-miR-4801	CLIP-seq
MIRT2665874	hsa-miR-509-3-5p	CLIP-seq
MIRT2665875	hsa-miR-509-5p	CLIP-seq
MIRT2665876	hsa-miR-520d-5p	CLIP-seq
MIRT2665877	hsa-miR-524-5p	CLIP-seq
MIRT2665878	hsa-miR-613	CLIP-seq
MIRT2665879	hsa-miR-626	CLIP-seq
MIRT2665880	hsa-miR-639	CLIP-seq
MIRT2665881	hsa-miR-663b	CLIP-seq

Show/Hide all (12)

GO ID	Ontology	Definition	Evidence	Reference
GO:0003676	Function	Nucleic acid binding	IEA
GO:0003723	Function	RNA binding	HDA	22658674, 22681889
GO:0003723	Function	RNA binding	IBA
GO:0005515	Function	Protein binding	IPI	16189514, 21516116, 23455924, 25416956, 32296183, 32814053, 33961781
GO:0005634	Component	Nucleus	IEA
GO:0005730	Component	Nucleolus	IEA
GO:0008270	Function	Zinc ion binding	IEA
GO:0022625	Component	Cytosolic large ribosomal subunit	IEA
GO:0042802	Function	Identical protein binding	IPI	32296183
GO:0043489	Process	RNA stabilization	IBA
GO:0046872	Function	Metal ion binding	IEA
GO:1990904	Component	Ribonucleoprotein complex	IEA

MIM	HGNC	e!Ensembl
619744	30246	ENSG00000121766

Q9NP64

Protein name

Zinc finger CCHC domain-containing protein 17 (Nucleolar protein of 40 kDa) (pNO40) (Pnn-interacting nucleolar protein) (Putative S1 RNA-binding domain protein) (PS1D protein)

PDB

2CQO

Family and domains

Pfam

Accession	ID	Position in sequence	Description	Type
PF00575	S1	13 → 86	S1 RNA binding domain	Domain

Sequence

MNSGRPETMENLPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEI
VDVGDKVWVKLIGREMKNDRIKVSLSMKVVNQGTGKDLDPNNVIIEQEERRRRSFQDYTG
QKITLEAVLNTTCKKCGCKGHFAKDCFMQPGGTKYSLIPDEEEEKEEAKSAEFEKPDPTR
NPSRKRKKEKKKKKHRDRKSSDSDSSDSESDTGKRARHTSKDSKAAKKKKKKKKHKKKHK
E

Sequence length

241

Interactions

View interactions

Evidence Score: ★☆☆☆☆ Gene-disease association found in Text Mining only ★★☆☆☆ Found in Text Mining and Unknown/Other Associations ★★★☆☆ Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆ ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★ ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)

Show/Hide Unknown Diseases (2)

Phenotype Name	Clinical Significance	Source	Evidence Score
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
COLOR VISION DISORDER	—	GWAS catalog	★★★★★ ★★☆☆☆ Found in Text Mining + Unknown/Other Associations
SCHIZOPHRENIA	—	GWAS catalog	★★★★★ ★★☆☆☆ Found in Text Mining + Unknown/Other Associations

Show/Hide Text Mining Associations (3)

Disease Name	Disease (Merged)	Source	PMID	Relationship Type	Evidence Score
Associations from Text Mining Disease associations identified through text mining
Alzheimer Disease	Alzheimer disease	Pubtator	38050142	Associate	★★★★★ ★☆☆☆☆ Found in Text Mining only
Muscular Dystrophy	Muscular dystrophy	BEFREE	28069438		★★★★★ ★☆☆☆☆ Found in Text Mining only
Night blindness congenital stationary	Night blindness, congenital stationary	Pubtator	38050142	Associate	★★★★★ ★☆☆☆☆ Found in Text Mining only

ZCCHC17 (zinc finger CCHC-type containing 17)