Gene Gene information from NCBI Gene database.
Entrez ID 5144
Gene name Phosphodiesterase 4D
Gene symbol PDE4D
Synonyms (NCBI Gene)
ACRDYS2DPDE3HSPDE4DPDE43PDE4DN2STRK1
Chromosome 5
Chromosome location 5q11.2-q12.1
Summary This gene encodes one of four mammalian counterparts to the fruit fly `dunce` gene. The encoded protein has 3`,5`-cyclic-AMP phosphodiesterase activity and degrades cAMP, which acts as a signal transduction molecule in multiple cell types. This gene uses
SNPs SNP information provided by dbSNP.
13
SNP ID Visualize variation Clinical significance Consequence
rs387906744 T>G Pathogenic Genic downstream transcript variant, coding sequence variant, missense variant
rs397514464 G>T Pathogenic Missense variant, genic upstream transcript variant, genic downstream transcript variant, coding sequence variant, 5 prime UTR variant
rs397514465 A>C,G Pathogenic Missense variant, genic upstream transcript variant, genic downstream transcript variant, coding sequence variant, 5 prime UTR variant
rs397514466 A>C Pathogenic Genic upstream transcript variant, coding sequence variant, missense variant, 5 prime UTR variant
rs397514467 T>G Pathogenic Genic downstream transcript variant, coding sequence variant, missense variant
miRNA miRNA information provided by mirtarbase database.
549
miRTarBase ID miRNA Experiments Reference
MIRT018254 hsa-miR-335-5p Microarray 18185580
MIRT019645 hsa-miR-340-5p Sequencing 20371350
MIRT025858 hsa-miR-7-5p Microarray 17612493
MIRT027087 hsa-miR-103a-3p Sequencing 20371350
MIRT031236 hsa-miR-19b-3p Sequencing 20371350
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
59
GO ID Ontology Definition Evidence Reference
GO:0002027 Process Regulation of heart rate ISS 16213210
GO:0004114 Function 3',5'-cyclic-nucleotide phosphodiesterase activity IEA
GO:0004114 Function 3',5'-cyclic-nucleotide phosphodiesterase activity NAS 10913353
GO:0004115 Function 3',5'-cyclic-AMP phosphodiesterase activity IBA
GO:0004115 Function 3',5'-cyclic-AMP phosphodiesterase activity IDA 9371713, 12121997, 17404263, 20819076
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
600129 8783 ENSG00000113448
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q08499
Protein name 3',5'-cyclic-AMP phosphodiesterase 4D (EC 3.1.4.53) (DPDE3) (PDE43) (cAMP-specific phosphodiesterase 4D)
Protein function Hydrolyzes the second messenger cAMP, which is a key regulator of many important physiological processes.
PDB 1E9K , 1MKD , 1OYN , 1PTW , 1Q9M , 1TB7 , 1TBB , 1XOM , 1XON , 1XOQ , 1XOR , 1Y2B , 1Y2C , 1Y2D , 1Y2E , 1Y2K , 1ZKN , 2FM0 , 2FM5 , 2PW3 , 2QYN , 3G4G , 3G4I , 3G4K , 3G4L , 3G58 , 3IAD , 3IAK , 3K4S , 3SL3 , 3SL4 , 3SL5 , 3SL6 , 3SL8 , 3V9B , 4OGB , 4W1O , 4WCU , 5K1I , 5K32 , 5LBO , 5TKB , 5WH5 , 5WH6 , 5WQA , 6AKR , 6BOJ , 6F6U , 6F8R , 6F8T , 6F8U
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF18100 PDE4_UCR 223 339 Phosphodiesterase 4 upstream conserved regions (UCR) Domain
PF00233 PDEase_I 461 702 Domain
Tissue specificity TISSUE SPECIFICITY: Expressed in colonic epithelial cells (at protein level). Widespread; most abundant in skeletal muscle. {ECO:0000269|PubMed:12834813, ECO:0000269|PubMed:17244609}.; TISSUE SPECIFICITY: [Isoform 6]: Detected in brain. {ECO:0000269|PubMe
Sequence
MEAEGSSAPARAGSGEGSDSAGGATLKAPKHLWRHEQHHQYPLRQPQFRLLHPHHHLPPP
PPPSPQPQPQCPLQPPPPPPLPPPPPPPGAARGRYASSGATGRVRHRGYSDTERYLYCRA
MDRTSYAVETGHRPGLKKSRMSWPSSFQGLRRFDVDNGTSAGRSPLDPMTSPGSGLILQA
NFVHSQRRESFLYRSDSDYDLSPKSMSRNSSIASDIHGDDLIVTPFAQVLASLRTVRNNF
AALTNLQDRAPSKRSPMCNQPSINKATITEEAYQKLASETLEELDWCLDQLETLQTRHSV
SEMASNKFKRMLNRELTHLSEMSRSGNQVSEFISNTFLD
KQHEVEIPSPTQKEKEKKKRP
MSQISGVKKLMHSSSLTNSSIPRFGVKTEQEDVLAKELEDVNKWGLHVFRIAELSGNRPL
TVIMHTIFQERDLLKTFKIPVDTLITYLMTLEDHYHADVAYHNNIHAADVVQSTHVLLST
PALEAVFTDLEILAAIFASAIHDVDHPGVSNQFLINTNSELALMYNDSSVLENHHLAVGF
KLLQEENCDIFQNLTKKQRQSLRKMVIDIVLATDMSKHMNLLADLKTMVETKKVTSSGVL
LLDNYSDRIQVLQNMVHCADLSNPTKPLQLYRQWTDRIMEEFFRQGDRERERGMEISPMC
DKHNASVEKSQVGFIDYIVHPLWETWADLVHPDAQDILDTLE
DNREWYQSTIPQSPSPAP
DDPEEGRQGQTEKFQFELTLEEDGESDTEKDSGSQVEEDTSCSDSKTLCTQDSESTEIPL
DEQVEEEAVGEEEESQPEACVIDDRSPDT
Sequence length 809
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Purine metabolism
Metabolic pathways
cAMP signaling pathway
Parathyroid hormone synthesis, secretion and action
Morphine addiction
  DARPP-32 events
G alpha (s) signalling events
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
50
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Acrodysostosis 2 with or without hormone resistance Pathogenic; Likely pathogenic rs397514465, rs587777188, rs2530962740, rs2479492253, rs397514464, rs397514466, rs397514467, rs397514468, rs387906744, rs397514469, rs397515433, rs1751144333, rs1743358464 RCV000087310
RCV000087311
RCV004790402
RCV003153219
RCV000022935
View all (9 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
Acrodysostosis Benign; Likely benign; Uncertain significance; Conflicting classifications of pathogenicity ClinVar
CTD
★★★☆☆
Reported in Unknown/Other Associations (≥2 sources)
ACRODYSOSTOSIS WITH MULTIPLE HORMONE RESISTANCE Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Acute myeloid leukemia Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ALZHEIMER DISEASE GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Acrodysostosis Acrodysostosis BEFREE 22464250, 22464252, 23033274, 23043190, 24203977, 25044890, 25064455, 25075981, 26763073, 27109785, 28515031, 29016851, 29280743, 30006632, 31520578
★★★☆☆
Reported in Unknown/Other Associations (≥2 sources)
Acrodysostosis Acrodysostosis ORPHANET_DG 22464250, 22464252
★★★☆☆
Reported in Unknown/Other Associations (≥2 sources)
Acrodysostosis Acrodysostosis Pubtator 22464250, 22464252, 25075981, 26763073, 28515031, 30006632, 31041856, 32783359, 33858404 Associate
★★★☆☆
Reported in Unknown/Other Associations (≥2 sources)
Acrodysostosis Acrodysostosis Orphanet
★★★☆☆
Reported in Unknown/Other Associations (≥2 sources)
Acrodysostosis Acrodysostosis GENOMICS_ENGLAND_DG
★★★☆☆
Reported in Unknown/Other Associations (≥2 sources)
Acrodysostosis Acrodysostosis CTD_human_DG
★★★☆☆
Reported in Unknown/Other Associations (≥2 sources)
ACRODYSOSTOSIS 1 WITH OR WITHOUT HORMONE RESISTANCE Acrodysostosis With Or Without Hormone Resistance GENOMICS_ENGLAND_DG 23033274
★☆☆☆☆
Found in Text Mining only
ACRODYSOSTOSIS 1 WITH OR WITHOUT HORMONE RESISTANCE Acrodysostosis With Or Without Hormone Resistance CTD_human_DG
★☆☆☆☆
Found in Text Mining only
ACRODYSOSTOSIS 2 WITH OR WITHOUT HORMONE RESISTANCE ACRODYSOSTOSIS WITH OR WITHOUT HORMONE RESISTANCE UNIPROT_DG 22464250, 22464252, 23033274, 23043190
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
ACRODYSOSTOSIS 2 WITH OR WITHOUT HORMONE RESISTANCE ACRODYSOSTOSIS WITH OR WITHOUT HORMONE RESISTANCE BEFREE 29016851
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)