Gene Gene information from NCBI Gene database.
Entrez ID 51119
Gene name SBDS ribosome maturation factor
Gene symbol SBDS
Synonyms (NCBI Gene)
CGI-97SDO1SDSSWDS
Chromosome 7
Chromosome location 7q11.21
Summary This gene encodes a highly conserved protein that plays an essential role in ribosome biogenesis. The encoded protein interacts with elongation factor-like GTPase 1 to disassociate eukaryotic initiation factor 6 from the late cytoplasmic pre-60S ribosomal
SNPs SNP information provided by dbSNP.
13
SNP ID Visualize variation Clinical significance Consequence
rs113993991 TA>AG Pathogenic Coding sequence variant, stop gained
rs113993992 C>G Pathogenic Splice donor variant
rs113993993 A>C,G Risk-factor, pathogenic Splice donor variant
rs113993994 CTTT>- Pathogenic Coding sequence variant, frameshift variant
rs113993995 C>G Pathogenic Missense variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
170
miRTarBase ID miRNA Experiments Reference
MIRT016171 hsa-miR-590-3p Sequencing 20371350
MIRT051786 hsa-let-7c-5p CLASH 23622248
MIRT1326686 hsa-miR-103a CLIP-seq
MIRT1326687 hsa-miR-107 CLIP-seq
MIRT1326688 hsa-miR-1183 CLIP-seq
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
27
GO ID Ontology Definition Evidence Reference
GO:0000922 Component Spindle pole IDA 18324336, 19759903
GO:0001833 Process Inner cell mass cell proliferation IEA
GO:0002244 Process Hematopoietic progenitor cell differentiation IMP 19759903
GO:0003723 Function RNA binding HDA 22658674
GO:0005515 Function Protein binding IPI 17475909, 17643419, 20015955, 21044950, 26871637, 30545121, 39251607
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
607444 19440 ENSG00000126524
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q9Y3A5
Protein name Ribosome maturation protein SBDS (Shwachman-Bodian-Diamond syndrome protein)
Protein function Required for the assembly of mature ribosomes and ribosome biogenesis. Together with EFL1, triggers the GTP-dependent release of EIF6 from 60S pre-ribosomes in the cytoplasm, thereby activating ribosomes for translation competence by allowing 80
PDB 2KDO , 2L9N , 5AN9 , 5ANB , 5ANC , 6QKL
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF01172 SBDS 14 101 Shwachman-Bodian-Diamond syndrome (SBDS) protein Family
PF09377 SBDS_C 107 225 SBDS protein C-terminal domain Domain
Tissue specificity TISSUE SPECIFICITY: Widely expressed.
Sequence
Sequence length 250
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG 
  Ribosome biogenesis in eukaryotes  
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
33
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Acute myeloid leukemia Likely pathogenic; Pathogenic rs113993993 RCV005887242
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Agenesis of permanent teeth Likely pathogenic; Pathogenic rs113993993, rs120074160 RCV000626935
RCV000626934
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Aplastic anemia Likely pathogenic; Pathogenic rs1411636529, rs113993991, rs113993993, rs373730800, rs113993990, rs2536932418, rs752809798, rs1376011266, rs2536930205, rs2536932390, rs745661722, rs775057252, rs113993997, rs1793080553, rs2536932319
View all (10 more)
RCV003475533
RCV002496241
RCV000763594
RCV003474976
RCV002503966
View all (20 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Aplastic anemia, susceptibility to Likely pathogenic; Pathogenic rs113993993 RCV000003348
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
ANEMIA, APLASTIC CTD
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ANODONTIA OF PERMANENT DENTITION Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
APLASTIC ANEMIA, IDIOPATHIC Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
DESBUQUOIS SYNDROME CTD
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Acquired Hypogammaglobulinemia Common Variable Immunodeficiency BEFREE 18190602
★☆☆☆☆
Found in Text Mining only
Acute monocytic leukemia Monocytic Leukemia GENOMICS_ENGLAND_DG 28297620
★☆☆☆☆
Found in Text Mining only
Adrenal Gland Pheochromocytoma Adrenal Gland Pheochromocytoma BEFREE 14974914, 16288654, 16357557, 16954163, 17102078, 17525480, 18726616, 18978332, 19145771, 19522823, 19550080, 19576851, 19802898, 19915015, 20236688
View all (19 more)
★☆☆☆☆
Found in Text Mining only
Agenesis of corpus callosum Agenesis Of Corpus Callosum BEFREE 28819017
★☆☆☆☆
Found in Text Mining only
Amyloidosis Amyloidosis BEFREE 31713198
★☆☆☆☆
Found in Text Mining only
Anemia Anemia HPO_DG
★☆☆☆☆
Found in Text Mining only
Anemia Aplastic Aplastic anemia Pubtator 17478638 Associate
★☆☆☆☆
Found in Text Mining only
Anemia, Diamond-Blackfan Anemia LHGDN 16529906
★☆☆☆☆
Found in Text Mining only
Anemia, Diamond-Blackfan Anemia BEFREE 21062271
★☆☆☆☆
Found in Text Mining only
Aneuploidy Aneuploidy Pubtator 18324336 Associate
★☆☆☆☆
Found in Text Mining only