Gene Gene information from NCBI Gene database.
Entrez ID 51008
Gene name Activating signal cointegrator 1 complex subunit 1
Gene symbol ASCC1
Synonyms (NCBI Gene)
ASC1p50CGI-18SMABF2p50
Chromosome 10
Chromosome location 10q22.1
Summary This gene encodes a subunit of the activating signal cointegrator 1 (ASC-1) complex. The ASC-1 complex is a transcriptional coactivator that plays an important role in gene transactivation by multiple transcription factors including activating protein 1 (
SNPs SNP information provided by dbSNP.
7
SNP ID Visualize variation Clinical significance Consequence
rs145940742 T>C Conflicting-interpretations-of-pathogenicity Coding sequence variant, missense variant, non coding transcript variant, 5 prime UTR variant
rs146370051 T>C Benign, pathogenic, likely-benign Coding sequence variant, missense variant, non coding transcript variant
rs183415577 G>A Pathogenic Coding sequence variant, non coding transcript variant, stop gained
rs747595523 C>T Pathogenic Splice donor variant
rs753324947 ->C Pathogenic Coding sequence variant, frameshift variant, non coding transcript variant
miRNA miRNA information provided by mirtarbase database.
345
miRTarBase ID miRNA Experiments Reference
MIRT714021 hsa-miR-6776-3p HITS-CLIP 19536157
MIRT714020 hsa-miR-224-5p HITS-CLIP 19536157
MIRT714019 hsa-miR-500b-3p HITS-CLIP 19536157
MIRT714018 hsa-miR-6840-3p HITS-CLIP 19536157
MIRT615731 hsa-miR-548n HITS-CLIP 23824327
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
16
GO ID Ontology Definition Evidence Reference
GO:0003723 Function RNA binding IEA
GO:0005515 Function Protein binding IPI 25416956, 28514442, 29997253, 32296183, 33961781
GO:0005634 Component Nucleus IBA
GO:0005634 Component Nucleus IDA 12077347, 26924529, 29997253
GO:0005634 Component Nucleus IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
614215 24268 ENSG00000138303
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q8N9N2
Protein name Activating signal cointegrator 1 complex subunit 1 (ASC-1 complex subunit p50) (Trip4 complex subunit p50)
Protein function Plays a role in DNA damage repair as component of the ASCC complex (PubMed:29997253). Part of the ASC-1 complex that enhances NF-kappa-B, SRF and AP1 transactivation (PubMed:12077347). In cells responding to gastrin-activated paracrine signals,
PDB 8TLY
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00013 KH_1 92 149 KH domain Domain
PF10469 AKAP7_NLS 161 378 Domain
Tissue specificity TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:12077347}.
Sequence
Sequence length 400
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  Reactome
    ALKBH3 mediated reversal of alkylation damage
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
27
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Arthrogryposis multiplex congenita Likely pathogenic; Pathogenic rs747595523 RCV000855457
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
ASCC1-related disorder Likely pathogenic; Pathogenic rs753324947, rs2493337844 RCV004579541
RCV003419044
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Barrett esophagus Pathogenic rs138245920 RCV001706772
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Centronuclear myopathy Pathogenic rs866050664 RCV004586997
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
Acute myeloid leukemia Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ALZHEIMER DISEASE GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
BARRETT ESOPHAGUS/ESOPHAGEAL ADENOCARCINOMA Benign; Likely benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Cholangiocarcinoma Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Acquired Hypogammaglobulinemia Common Variable Immunodeficiency BEFREE 26279205
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma Of Esophagus Esophageal Cancer BEFREE 21750116
★☆☆☆☆
Found in Text Mining only
Adult Diffuse Large B-Cell Lymphoma B-cell Lymphoma BEFREE 28281555
★☆☆☆☆
Found in Text Mining only
Adult Hodgkin Lymphoma Hodgkin Lymphoma BEFREE 26988706
★☆☆☆☆
Found in Text Mining only
Amyloidosis Amyloidosis BEFREE 24345324
★☆☆☆☆
Found in Text Mining only
Amyotrophic Lateral Sclerosis Amyotrophic Lateral Sclerosis BEFREE 27512062
★☆☆☆☆
Found in Text Mining only
ANOPHTHALMIA AND PULMONARY HYPOPLASIA Syndromic microphthalmia BEFREE 27454293
★☆☆☆☆
Found in Text Mining only
Aortic Valve Insufficiency Aortic Valve Insufficiency BEFREE 12868372
★☆☆☆☆
Found in Text Mining only
Arthrogryposis Arthrogryposis multiplex congenita GENOMICS_ENGLAND_DG 28749478
★☆☆☆☆
Found in Text Mining only
Arthrogryposis Arthrogryposis Pubtator 33931933 Associate
★☆☆☆☆
Found in Text Mining only