Gene Gene information from NCBI Gene database.
Entrez ID 5092
Gene name Pterin-4 alpha-carbinolamine dehydratase 1
Gene symbol PCBD1
Synonyms (NCBI Gene)
DCOHPCBDPCDPHS
Chromosome 10
Chromosome location 10q22.1
Summary This gene encodes a member of the pterin-4-alpha-carbinolamine dehydratase family. The encoded protein has been identified as a moonlighting protein based on its ability to perform mechanistically distinct functions. The encoded protein functions as both
SNPs SNP information provided by dbSNP.
8
SNP ID Visualize variation Clinical significance Consequence
rs104894172 C>A Likely-pathogenic Stop gained, intron variant, coding sequence variant
rs104894177 A>G Pathogenic Intron variant, missense variant, coding sequence variant
rs115117837 C>G,T Pathogenic, likely-benign Intron variant, missense variant, coding sequence variant
rs121913014 G>A Pathogenic Intron variant, missense variant, coding sequence variant
rs121913015 G>A Pathogenic Intron variant, stop gained, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
201
miRTarBase ID miRNA Experiments Reference
MIRT043343 hsa-miR-331-3p CLASH 23622248
MIRT1216231 hsa-miR-10a CLIP-seq
MIRT1216232 hsa-miR-10b CLIP-seq
MIRT1216233 hsa-miR-1182 CLIP-seq
MIRT1216234 hsa-miR-1207-5p CLIP-seq
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
17
GO ID Ontology Definition Evidence Reference
GO:0003713 Function Transcription coactivator activity TAS 1763325
GO:0004505 Function Phenylalanine 4-monooxygenase activity IEA
GO:0005515 Function Protein binding IPI 16189514, 20195357, 20211142, 21988832, 25416956, 26871637, 29892012, 31515488, 32296183, 33961781, 35140242
GO:0005634 Component Nucleus IEA
GO:0005654 Component Nucleoplasm IDA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
126090 8646 ENSG00000166228
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
P61457
Protein name Pterin-4-alpha-carbinolamine dehydratase (PHS) (EC 4.2.1.96) (4-alpha-hydroxy-tetrahydropterin dehydratase) (Dimerization cofactor of hepatocyte nuclear factor 1-alpha) (DCoH) (Dimerization cofactor of HNF1) (Phenylalanine hydroxylase-stimulating protein)
Protein function Involved in tetrahydrobiopterin biosynthesis (By similarity). Seems to both prevent the formation of 7-pterins and accelerate the formation of quinonoid-BH2. Coactivator for HNF1A-dependent transcription (By similarity). Regulates the dimerizati
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF01329 Pterin_4a 6 99 Pterin 4 alpha carbinolamine dehydratase Domain
Sequence
Sequence length 104
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Folate biosynthesis
Metabolic pathways
  Phenylalanine metabolism
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
6
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Pterin-4 alpha-carbinolamine dehydratase 1 deficiency Pathogenic; Likely pathogenic rs2492833598, rs2492833589, rs2492830006, rs2492832243, rs769110552, rs1218193751, rs104894172, rs104894177, rs121913015, rs1589483932, rs397518414, rs397518416 RCV002807008
RCV003131126
RCV005047580
RCV003517906
RCV003632828
View all (7 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
Gastric cancer Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Hyperphenylalaninemia due to tetrahydrobiopterin deficiency Uncertain significance; Benign; Likely benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
PCBD1-related disorder Likely benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
TYPE 2 DIABETES MELLITUS GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Adenocarcinoma of lung (disorder) Lung adenocarcinoma CTD_human_DG 27602772
★☆☆☆☆
Found in Text Mining only
Asthma Asthma BEFREE 29940967, 31711989
★☆☆☆☆
Found in Text Mining only
Brain Neoplasms Brain Neoplasms BEFREE 11563634
★☆☆☆☆
Found in Text Mining only
Bronchiectasis Bronchiectasis BEFREE 31471703
★☆☆☆☆
Found in Text Mining only
Carcinoma Hepatocellular Hepatocellular carcinoma Pubtator 1331985 Associate
★☆☆☆☆
Found in Text Mining only
Clumsiness - motor delay Motor delay HPO_DG
★☆☆☆☆
Found in Text Mining only
Colon Carcinoma Colon Carcinoma BEFREE 11563634
★☆☆☆☆
Found in Text Mining only
Colonic Neoplasms Colonic neoplasm Pubtator 10514393 Stimulate
★☆☆☆☆
Found in Text Mining only
Colorectal Neoplasms Colorectal neoplasm Pubtator 10514393 Associate
★☆☆☆☆
Found in Text Mining only
Cystic Fibrosis Cystic Fibrosis BEFREE 29940967
★☆☆☆☆
Found in Text Mining only