Gene Gene information from NCBI Gene database.
Entrez ID 5081
Gene name Paired box 7
Gene symbol PAX7
Synonyms (NCBI Gene)
CMYO19CMYP19HUP1MYOSCOPAX7BRMS2
Chromosome 1
Chromosome location 1p36.13
Summary This gene is a member of the paired box (PAX) family of transcription factors. Members of this gene family typically contain a paired box domain, an octapeptide, and a paired-type homeodomain. These genes play critical roles during fetal development and c
SNPs SNP information provided by dbSNP.
4
SNP ID Visualize variation Clinical significance Consequence
rs752326328 C>A,T Pathogenic Coding sequence variant, stop gained, synonymous variant
rs1176071790 C>T Likely-pathogenic, pathogenic Stop gained, coding sequence variant
rs1392068839 C>T Pathogenic Coding sequence variant, missense variant
rs1570098248 G>A Pathogenic Splice acceptor variant
miRNA miRNA information provided by mirtarbase database.
159
miRTarBase ID miRNA Experiments Reference
MIRT023463 hsa-miR-27b-3p Western blot;Other 19666532
MIRT526977 hsa-miR-4475 PAR-CLIP 22012620
MIRT526976 hsa-miR-4797-5p PAR-CLIP 22012620
MIRT526975 hsa-miR-5007-5p PAR-CLIP 22012620
MIRT526974 hsa-miR-7845-5p PAR-CLIP 22012620
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
39
GO ID Ontology Definition Evidence Reference
GO:0000785 Component Chromatin ISA
GO:0000978 Function RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
GO:0000981 Function DNA-binding transcription factor activity, RNA polymerase II-specific IBA
GO:0000981 Function DNA-binding transcription factor activity, RNA polymerase II-specific IEA
GO:0000981 Function DNA-binding transcription factor activity, RNA polymerase II-specific ISA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
167410 8621 ENSG00000009709
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
P23759
Protein name Paired box protein Pax-7 (HuP1)
Protein function Transcription factor that is involved in the regulation of muscle stem cells proliferation, playing a role in myogenesis and muscle regeneration.
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00292 PAX 34 161 Domain
PF00046 Homeodomain 218 274 Homeodomain Domain
PF12360 Pax7 345 385 Paired box protein 7 Family
Sequence
MAALPGTVPRMMRPAPGQNYPRTGFPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIV
EMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKPRQVATPDVEKKIEE
YKRENPGMFSWEIRDRLLKDGHCDRSTVPSGLVSSISRVLR
IKFGKKEEEDEADKKEDDG
EKKAKHSIDGILGDKGNRLDEGSDVESEPDLPLKRKQRRSRTTFTAEQLEELEKAFERTH
YPDIYTREELAQRTKLTEARVQVWFSNRRARWRK
QAGANQLAAFNHLLPGGFPPTGMPTL
PPYQLPDSTYPTTTISQDGGSTVHRPQPLPPSTMHQGGLAAAAAAADTSSAYGARHSFSS
YSDSFMNPAAPSNHMNPVSNGLSPQ
VMSILGNPSAVPPQPQADFSISPLHGGLDSATSIS
ASCSQRADSIKPGDSLPTSQAYCPPTYSTTGYSVDPVAGYQYGQYGQTAVDYLAKNVSLS
TQRRMKLGEHSAVLGLLPVETGQAY
Sequence length 505
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG 
  Transcriptional misregulation in cancer  
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
18
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Alveolar rhabdomyosarcoma Likely pathogenic; Pathogenic rs1176071790 RCV000991413
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Myopathy, congenital, progressive, with scoliosis Pathogenic; Likely pathogenic rs752326328, rs1570098248, rs1176071790, rs1392068839 RCV000850254
RCV000850255
RCV000850256
RCV000850257
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
COLOR VISION DISORDER GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
CONGENITAL MYOPATHY 19 Disgenet, HPO
Disgenet, HPO
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Congenital myopathy with myasthenic-like onset Uncertain significance ClinVar
ClinGen, Disgenet
ClinGen, Disgenet
★★★☆☆
Reported in Unknown/Other Associations (≥2 sources)
GESTATIONAL DIABETES GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Alveolar rhabdomyosarcoma Alveolar Rhabdomyosarcoma BEFREE 10439042, 10700864, 11063797, 11807989, 12039929, 12183429, 14697639, 16607381, 16645206, 16849537, 17097083, 17297479, 17527077, 17954266, 18303411
View all (25 more)
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Alveolar rhabdomyosarcoma Alveolar Rhabdomyosarcoma LHGDN 12039929, 17285543
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Alveolar rhabdomyosarcoma Alveolar Rhabdomyosarcoma GENOMICS_ENGLAND_DG 25768946
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Alveolar rhabdomyosarcoma Alveolar Rhabdomyosarcoma ORPHANET_DG
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Alveolar rhabdomyosarcoma Alveolar Rhabdomyosarcoma HPO_DG
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Alveolar rhabdomyosarcoma Alveolar Rhabdomyosarcoma CTD_human_DG
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Alveolar rhabdomyosarcoma Alveolar Rhabdomyosarcoma Orphanet
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Amyotrophic Lateral Sclerosis Amyotrophic lateral sclerosis Pubtator 27195289 Associate
★☆☆☆☆
Found in Text Mining only
Blepharoptosis Ptosis GENOMICS_ENGLAND_DG 31092906
★☆☆☆☆
Found in Text Mining only
Breast Neoplasms Breast neoplasm Pubtator 33492284 Associate
★☆☆☆☆
Found in Text Mining only