Gene Gene information from NCBI Gene database.
Entrez ID 5071
Gene name Parkin RBR E3 ubiquitin protein ligase
Gene symbol PRKN
Synonyms (NCBI Gene)
AR-JPLPRS2PARK2PDJ
Chromosome 6
Chromosome location 6q26
Summary The precise function of this gene is unknown; however, the encoded protein is a component of a multiprotein E3 ubiquitin ligase complex that mediates the targeting of substrate proteins for proteasomal degradation. Mutations in this gene are known to caus
SNPs SNP information provided by dbSNP.
27
SNP ID Visualize variation Clinical significance Consequence
rs34424986 G>A,T Pathogenic Missense variant, non coding transcript variant, synonymous variant, coding sequence variant
rs55774500 G>A,T Pathogenic, uncertain-significance, conflicting-interpretations-of-pathogenicity Intron variant, non coding transcript variant, coding sequence variant, missense variant
rs55777503 CT>- Likely-pathogenic Intron variant, non coding transcript variant, coding sequence variant, frameshift variant
rs55830907 G>A Conflicting-interpretations-of-pathogenicity Non coding transcript variant, coding sequence variant, missense variant
rs137853054 G>A,C,T Conflicting-interpretations-of-pathogenicity, pathogenic Missense variant, non coding transcript variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
11
miRTarBase ID miRNA Experiments Reference
MIRT516520 hsa-miR-483-5p PAR-CLIP 23446348
MIRT516519 hsa-miR-4755-3p PAR-CLIP 23446348
MIRT516518 hsa-miR-193b-5p PAR-CLIP 23446348
MIRT516517 hsa-miR-548s PAR-CLIP 23446348
MIRT516516 hsa-miR-4701-5p PAR-CLIP 23446348
Transcription factors Transcription factors information provided by TRRUST V2 database.
1
Transcription factor Regulation Reference
SIM2 Unknown 15963499
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
261
GO ID Ontology Definition Evidence Reference
GO:0000122 Process Negative regulation of transcription by RNA polymerase II IMP 23985028
GO:0000139 Component Golgi membrane IEA
GO:0000151 Component Ubiquitin ligase complex IBA
GO:0000151 Component Ubiquitin ligase complex IDA 12150907, 17314283, 23933751
GO:0000209 Process Protein polyubiquitination IDA 12150907, 16227987, 18541373, 19880420
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
602544 8607 ENSG00000185345
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
O60260
Protein name E3 ubiquitin-protein ligase parkin (Parkin) (EC 2.3.2.31) (Parkin RBR E3 ubiquitin-protein ligase) (Parkinson juvenile disease protein 2) (Parkinson disease protein 2)
Protein function Functions within a multiprotein E3 ubiquitin ligase complex, catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins (PubMed:10888878, PubMed:10973942, PubMed:11431533, PubMed:12150907, PubMed:12628165, PubMed:15105460,
PDB 1IYF , 2JMO , 4BM9 , 4I1F , 4I1H , 5C1Z , 5C23 , 5C9V , 5N2W , 5N38 , 5TR5 , 6GLC , 6HUE , 6N13 , 8IK6 , 8IKV , 8JWV , 8WZN , 8WZO
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00240 ubiquitin 3 73 Ubiquitin family Domain
PF17976 zf-RING_12 145 217 RING/Ubox like zinc-binding domain Domain
PF17978 zf-RING_14 228 318 RING/Ubox like zinc-binding domain Domain
PF01485 IBR 399 458 IBR domain, a half RING-finger domain Domain
Tissue specificity TISSUE SPECIFICITY: Highly expressed in the brain including the substantia nigra (PubMed:19501131, PubMed:9560156). Expressed in heart, testis and skeletal muscle (PubMed:9560156). Expression is down-regulated or absent in tumor biopsies, and absent in th
Sequence
Sequence length 465
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Ubiquitin mediated proteolysis
Mitophagy - animal
Protein processing in endoplasmic reticulum
Parkinson disease
Amyotrophic lateral sclerosis
Pathways of neurodegeneration - multiple diseases
  Pink/Parkin Mediated Mitophagy
Josephin domain DUBs
Aggrephagy
Amyloid fiber formation
Antigen processing: Ubiquitination & Proteasome degradation
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
63
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Autism spectrum disorder Pathogenic rs751037529 RCV003313956
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Autosomal dominant Parkinson disease 1 Likely pathogenic; Pathogenic rs771586218 RCV005629857
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Autosomal recessive juvenile Parkinson disease 2 Pathogenic; Likely pathogenic rs2128330405, rs1440010564, rs1562519380, rs2115426221, rs137853054, rs137853055, rs137853056, rs137853057, rs137853058, rs137853059, rs34424986, rs137853060, rs397518439, rs191486604, rs1779896481
View all (13 more)
RCV001789789
RCV002489862
RCV002295357
RCV002250877
RCV000007452
View all (23 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Leprosy, susceptibility to, 2 Likely pathogenic; Pathogenic rs34424986 RCV000763143
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
ALZHEIMER DISEASE GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
AUTISM SPECTRUM DISORDERS Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
AUTISTIC DISORDER CTD, Disgenet
CTD, Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
COLONIC NEOPLASMS CTD
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Abnormal male sexual function Abnormal Male Sexual Function HPO_DG
★☆☆☆☆
Found in Text Mining only
Acute lymphocytic leukemia Lymphocytic Leukemia BEFREE 16287063, 21663383
★☆☆☆☆
Found in Text Mining only
Acute Promyelocytic Leukemia Promyelocytic Leukemia BEFREE 17924349
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma Adenocarcinoma BEFREE 25274033
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma of lung (disorder) Lung adenocarcinoma BEFREE 22302706, 29945960
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma of prostate Prostate adenocarcinoma BEFREE 28414305
★☆☆☆☆
Found in Text Mining only
Adenoma Adenoma BEFREE 20696900, 30884828
★☆☆☆☆
Found in Text Mining only
Adenomatous Polyposis Coli Multiple polyposis syndrome BEFREE 20696900, 22751121
★☆☆☆☆
Found in Text Mining only
Adult Learning Disorders Learning Disorders CTD_human_DG 12915482
★☆☆☆☆
Found in Text Mining only
Age-Related Memory Disorders Age-Related Memory Disorders CTD_human_DG 12915482
★☆☆☆☆
Found in Text Mining only