Gene Gene information from NCBI Gene database.
Entrez ID 4952
Gene name OCRL inositol polyphosphate-5-phosphatase
Gene symbol OCRL
Synonyms (NCBI Gene)
DENT2Dent-2INPP5FLOCRNPHL2OCRL-1OCRL1
Chromosome X
Chromosome location Xq26.1
Summary This gene encodes an inositol polyphosphate 5-phosphatase. This protein is involved in regulating membrane trafficking and is located in numerous subcellular locations including the trans-Golgi network, clathrin-coated vesicles and, endosomes and the plas
SNPs SNP information provided by dbSNP.
44
SNP ID Visualize variation Clinical significance Consequence
rs137853260 G>A Pathogenic Coding sequence variant, missense variant
rs137853261 C>G Pathogenic Coding sequence variant, missense variant
rs137853262 A>G Pathogenic Coding sequence variant, missense variant
rs137853263 C>A,T Not-provided, likely-pathogenic, pathogenic-likely-pathogenic Coding sequence variant, missense variant
rs137853846 C>T Likely-pathogenic Coding sequence variant, missense variant
miRNA miRNA information provided by mirtarbase database.
316
miRTarBase ID miRNA Experiments Reference
MIRT047730 hsa-miR-10a-5p CLASH 23622248
MIRT044664 hsa-miR-320a CLASH 23622248
MIRT043931 hsa-miR-378a-3p CLASH 23622248
MIRT042349 hsa-miR-484 CLASH 23622248
MIRT326301 hsa-miR-15a-5p HITS-CLIP 23313552
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
64
GO ID Ontology Definition Evidence Reference
GO:0001701 Process In utero embryonic development IEA
GO:0001750 Component Photoreceptor outer segment IDA 22543976
GO:0001750 Component Photoreceptor outer segment IEA
GO:0004439 Function Phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity IBA
GO:0004439 Function Phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
300535 8108 ENSG00000122126
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q01968
Protein name Inositol polyphosphate 5-phosphatase OCRL (EC 3.1.3.36) (EC 3.1.3.56) (Inositol polyphosphate 5-phosphatase OCRL-1) (OCRL-1) (Lowe oculocerebrorenal syndrome protein) (Phosphatidylinositol 3,4,5-triphosphate 5-phosphatase) (EC 3.1.3.86)
Protein function Catalyzes the hydrolysis of the 5-position phosphate of phosphatidylinositol 4,5-bisphosphate (PtdIns(4,5)P2) and phosphatidylinositol-3,4,5-bisphosphate (PtdIns(3,4,5)P3), with the greatest catalytic activity towards PtdIns(4,5)P2 (PubMed:10764
PDB 2KIE , 2QV2 , 3QBT , 3QIS , 4CMN
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF16726 OCRL_clath_bd 18 118 Inositol polyphosphate 5-phosphatase clathrin binding domain Domain
PF03372 Exo_endo_phos 245 524 Endonuclease/Exonuclease/phosphatase family Domain
PF00620 RhoGAP 735 878 RhoGAP domain Domain
Tissue specificity TISSUE SPECIFICITY: Brain, skeletal muscle, heart, kidney, lung, placenta and fibroblasts. Expressed in the retina and the retinal pigment epithelium. {ECO:0000269|PubMed:22543976}.
Sequence
MEPPLPVGAQPLATVEGMEMKGPLREPCALTLAQRNGQYELIIQLHEKEQHVQDIIPINS
HFRCVQEAEETLLIDIASNSGCKIRVQGDWIRERRFEIPDEEHCLKFLSAVLAAQKAQ
SQ
LLVPEQKDSSSWYQKLDTKDKPSVFSGLLGFEDNFSSMNLDKKINSQNQPTGIHREPPPP
PFSVNKMLPREKEASNKEQPKVTNTMRKLFVPNTQSGQREGLIKHILAKREKEYVNIQTF
RFFVGTWNVNGQSPDSGLEPWLNCDPNPPDIYCIGFQELDLSTEAFFYFESVKEQEWSMA
VERGLHSKAKYKKVQLVRLVGMMLLIFARKDQCRYIRDIATETVGTGIMGKMGNKGGVAV
RFVFHNTTFCIVNSHLAAHVEDFERRNQDYKDICARMSFVVPNQTLPQLNIMKHEVVIWL
GDLNYRLCMPDANEVKSLINKKDLQRLLKFDQLNIQRTQKKAFVDFNEGEIKFIPTYKYD
SKTDRWDSSGKCRVPAWCDRILWRGTNVNQLNYRSHMELKTSDH
KPVSALFHIGVKVVDE
RRYRKVFEDSVRIMDRMENDFLPSLELSRREFVFENVKFRQLQKEKFQISNNGQVPCHFS
FIPKLNDSQYCKPWLRAEPFEGYLEPNETVDISLDVYVSKDSVTILNSGEDKIEDILVLH
LDRGKDYFLTISGNYLPSCFGTSLEALCRMKRPIREVPVTKLIDLEEDSFLEKEKSLLQM
VPLDEGASERPLQVPKEIWLLVDHLFKYACHQEDLFQTPGMQEELQQIIDCLDTSIPETI
PGSNHSVAEALLIFLEALPEPVICYELYQRCLDSAYDPRICRQVISQLPRCHRNVFRYLM
AFLRELLKFSEYNSVNANMIATLFTSLLLRPPPNLMAR
QTPSDRQRAIQFLLGFLLGSEE
D
Sequence length 901
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Inositol phosphate metabolism
Metabolic pathways
Phosphatidylinositol signaling system
  Synthesis of PIPs at the plasma membrane
Synthesis of PIPs at the Golgi membrane
Synthesis of IP2, IP, and Ins in the cytosol
Synthesis of IP3 and IP4 in the cytosol
Rho GTPase cycle
Golgi Associated Vesicle Biogenesis
Clathrin-mediated endocytosis
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
21
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Dent disease Likely pathogenic rs2521906486, rs398123289 RCV002308512
RCV002510447
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Dent disease type 2 Likely pathogenic; Pathogenic rs2124405779, rs2124419087, rs2124417909, rs2124392540, rs2124410812, rs2521838917, rs2521943150, rs2521838949, rs387906484, rs137853262, rs137853263, rs776743373, rs2521906062, rs2521889422, rs2521873170
View all (13 more)
RCV002479582
RCV005042508
RCV002249115
RCV002250163
RCV002250164
View all (23 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Developmental cataract Pathogenic rs2124446919 RCV001763536
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Lowe syndrome Pathogenic; Likely pathogenic rs2124404113, rs2124409486, rs2124404136, rs2124402634, rs2124429175, rs2124404743, rs2124418946, rs2124412861, rs2124412937, rs2124404250, rs2124405779, rs2124428298, rs2124430527, rs2124419087, rs2124402639
View all (61 more)
RCV001387353
RCV001387031
RCV001420679
RCV001526506
RCV001526507
View all (72 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
CONGENITAL CATARACT Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Congenital myopathy Benign; Likely benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
DENT DISEASE 2 CTD, Disgenet, HPO
CTD, Disgenet, HPO
CTD, Disgenet, HPO
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
DENTS DISEASE Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Adult Fanconi syndrome Fanconi syndrome BEFREE 28669993
★☆☆☆☆
Found in Text Mining only
Adult Fanconi syndrome Fanconi syndrome HPO_DG
★☆☆☆☆
Found in Text Mining only
Adult Rickets Rickets HPO_DG
★☆☆☆☆
Found in Text Mining only
Anemia Anemia HPO_DG
★☆☆☆☆
Found in Text Mining only
Anxiety Anxiety Disorder HPO_DG
★☆☆☆☆
Found in Text Mining only
Arthritis Arthritis HPO_DG
★☆☆☆☆
Found in Text Mining only
Attention deficit hyperactivity disorder Attention Deficit Hyperactivity Disorder HPO_DG
★☆☆☆☆
Found in Text Mining only
Autism Spectrum Disorder Autism Pubtator 30147856, 32393163 Associate
★☆☆☆☆
Found in Text Mining only
Autistic Disorder Autism BEFREE 22965764
★☆☆☆☆
Found in Text Mining only
Autistic Disorder Autism Pubtator 22965764 Associate
★☆☆☆☆
Found in Text Mining only