Gene Gene information from NCBI Gene database.
Entrez ID 4914
Gene name Neurotrophic receptor tyrosine kinase 1
Gene symbol NTRK1
Synonyms (NCBI Gene)
MTCTRKTRK1TRKATrk-Ap140-TrkA
Chromosome 1
Chromosome location 1q23.1
Summary This gene encodes a member of the neurotrophic tyrosine kinase receptor (NTKR) family. This kinase is a membrane-bound receptor that, upon neurotrophin binding, phosphorylates itself and members of the MAPK pathway. The presence of this kinase leads to ce
SNPs SNP information provided by dbSNP.
43
SNP ID Visualize variation Clinical significance Consequence
rs6336 C>T Benign, benign-likely-benign, pathogenic Coding sequence variant, missense variant
rs6339 G>T Benign, benign-likely-benign, pathogenic Coding sequence variant, missense variant
rs35669708 G>A,C Benign-likely-benign, benign, pathogenic, likely-benign Coding sequence variant, missense variant
rs80356674 T>A Pathogenic Intron variant
rs80356675 C>- Pathogenic Frameshift variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
1
miRTarBase ID miRNA Experiments Reference
MIRT2056950 hsa-miR-873 CLIP-seq
Transcription factors Transcription factors information provided by TRRUST V2 database.
2
Transcription factor Regulation Reference
ING4 Repression 22078444
MYCN Repression 21123453
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
128
GO ID Ontology Definition Evidence Reference
GO:0000166 Function Nucleotide binding IEA
GO:0004672 Function Protein kinase activity IEA
GO:0004713 Function Protein tyrosine kinase activity IDA 2927393
GO:0004713 Function Protein tyrosine kinase activity IEA
GO:0004714 Function Transmembrane receptor protein tyrosine kinase activity IBA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
191315 8031 ENSG00000198400
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
P04629
Protein name High affinity nerve growth factor receptor (EC 2.7.10.1) (Neurotrophic tyrosine kinase receptor type 1) (TRK1-transforming tyrosine kinase protein) (Tropomyosin-related kinase A) (Tyrosine kinase receptor) (Tyrosine kinase receptor A) (Trk-A) (gp140trk) (
Protein function Receptor tyrosine kinase involved in the development and the maturation of the central and peripheral nervous systems through regulation of proliferation, differentiation and survival of sympathetic and nervous neurons. High affinity receptor fo
PDB 1HE7 , 1SHC , 1WWA , 1WWW , 2IFG , 2N90 , 4AOJ , 4CRP , 4F0I , 4GT5 , 4PMM , 4PMP , 4PMS , 4PMT , 4YNE , 4YPS , 5H3Q , 5I8A , 5JFS , 5JFV , 5JFW , 5JFX , 5KMI , 5KMJ , 5KMK , 5KML , 5KMM , 5KMN , 5KMO , 5KVT , 5WR7 , 6D1Y , 6D1Z , 6D20 , 6D22 , 6DKB , 6DKG , 6DKI , 6DKW , 6IQN , 6J5L , 6NPT , 6NSP , 6NSS , 6PL1 , 6PL2 , 6PL3 , 6PL4 , 6PMA , 6PMB , 6PMC
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF16920 TPKR_C2 151 192 Tyrosine-protein kinase receptor C2 Ig-like domain Domain
PF18613 TrkA_TMD 417 438 Tyrosine kinase receptor A trans-membrane domain Domain
PF07714 PK_Tyr_Ser-Thr 510 781 Protein tyrosine and serine/threonine kinase Domain
Tissue specificity TISSUE SPECIFICITY: Isoform TrkA-I is found in most non-neuronal tissues. Isoform TrkA-II is primarily expressed in neuronal cells. TrkA-III is specifically expressed by pluripotent neural stem and neural crest progenitors. {ECO:0000269|PubMed:15488758, E
Sequence
MLRGGRRGQLGWHSWAAGPGSLLAWLILASAGAAPCPDACCPHGSSGLRCTRDGALDSLH
HLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRL
NLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQ
GPLAHMPNASCG
VPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMK
SGGLPSLGLTLANVTSDLNRKNVTCWAENDVGRAEVSVQVNVSFPASVQLHTAVEMHHWC
IPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYT
LLAANPFGQASASIMAAFMDNPFEFNPEDPIPVSFSPVDTNSTSGDPVEKKDETPFGVSV
AVGLAVFACLFLSTLLLV
LNKCGRRNKFGINRPAVLAPEDGLAMSLHFMTLGGSSLSPTE
GKGSGLQGHIIENPQYFSDACVHHIKRRDIVLKWELGEGAFGKVFLAECHNLLPEQDKML
VAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTEGRPLLMVFEYMRHGDLNRF
LRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAGLHFVHRDLATRNCLVGQ
GLVVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEI
FTYGKQPWYQLSNTEAIDCITQGRELERPRACPPEVYAIMRGCWQREPQQRHSIKDVHAR
L
QALAQAPPVYLDVLG
Sequence length 796
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  MAPK signaling pathway
Ras signaling pathway
Calcium signaling pathway
PI3K-Akt signaling pathway
Apoptosis
Neurotrophin signaling pathway
Inflammatory mediator regulation of TRP channels
Pathways in cancer
Transcriptional misregulation in cancer
Thyroid cancer
Central carbon metabolism in cancer
  Frs2-mediated activation
ARMS-mediated activation
Retrograde neurotrophin signalling
TRKA activation by NGF
PI3K/AKT activation
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
41
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Charcot-Marie-Tooth disease Likely pathogenic; Pathogenic rs747711259, rs763758904, rs1485714154, rs1571695851, rs764992664, rs756981419, rs764816792, rs1571685736, rs748672380, rs1232901259 RCV000790288
RCV000789608
RCV000790137
RCV000790289
RCV000789609
View all (5 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Familial medullary thyroid carcinoma Pathogenic rs1647927494 RCV001257443
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Hereditary insensitivity to pain with anhidrosis Pathogenic; Likely pathogenic rs2102885187, rs370828525, rs2102905446, rs2102912108, rs2102919112, rs2102920071, rs774533432, rs2102925213, rs1393272944, rs140852621, rs1647932465, rs748672380, rs2102900184, rs764771898, rs1324983370
View all (117 more)
RCV001384843
RCV001386283
RCV001386515
RCV001390022
RCV001387630
View all (137 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Neurodevelopmental disorder Likely pathogenic rs2102886126 RCV001780051
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
Acute myeloid leukemia Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Aganglionic megacolon Uncertain significance ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ALZHEIMERS DISEASE Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
AUTOIMMUNE DISEASE GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Acanthosis Nigricans Acanthosis Nigricans BEFREE 12452857
★☆☆☆☆
Found in Text Mining only
Acute Erythroblastic Leukemia Erythroblastic Leukemia BEFREE 18854870
★☆☆☆☆
Found in Text Mining only
Acute intermittent porphyria Intermittent Porphyria BEFREE 28270361
★☆☆☆☆
Found in Text Mining only
Acute leukemia Leukemia BEFREE 30592640
★☆☆☆☆
Found in Text Mining only
Acute lymphocytic leukemia Lymphocytic Leukemia BEFREE 29920189
★☆☆☆☆
Found in Text Mining only
Acute Megakaryocytic Leukemias Megakaryocytic Leukemia BEFREE 30046390
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma Adenocarcinoma LHGDN 16862449, 17671718
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma Adenocarcinoma BEFREE 27926778, 30801752, 31761448, 9097992
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma of large intestine Colorectal Cancer CGI_DG
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma of lung (disorder) Lung adenocarcinoma BEFREE 27151654, 30613269
★☆☆☆☆
Found in Text Mining only