Gene Gene information from NCBI Gene database.
Entrez ID 4907
Gene name 5'-nucleotidase ecto
Gene symbol NT5E
Synonyms (NCBI Gene)
CALJACD73E5NTNTNT5NTEeNeNT
Chromosome 6
Chromosome location 6q14.3
Summary The protein encoded by this gene is a plasma membrane protein that catalyzes the conversion of extracellular nucleotides to membrane-permeable nucleosides. The encoded protein is used as a determinant of lymphocyte differentiation. Defects in this gene ca
SNPs SNP information provided by dbSNP.
3
SNP ID Visualize variation Clinical significance Consequence
rs373328681 C>A,T Pathogenic Missense variant, coding sequence variant, stop gained
rs387906620 G>A Pathogenic Missense variant, coding sequence variant
rs774200574 ->A Pathogenic Frameshift variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
301
miRTarBase ID miRNA Experiments Reference
MIRT005130 hsa-miR-30a-5p pSILAC 18668040
MIRT001529 hsa-miR-155-5p pSILAC 18668040
MIRT001529 hsa-miR-155-5p Proteomics;Other 18668040
MIRT022996 hsa-miR-124-3p Proteomics;Microarray 18668037
MIRT023955 hsa-miR-1-3p Proteomics 18668040
Transcription factors Transcription factors information provided by TRRUST V2 database.
4
Transcription factor Regulation Reference
HIF1A Activation 12370277
HNF1A Unknown 10428853
LEF1 Unknown 10428853
SP1 Unknown 10428853
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
40
GO ID Ontology Definition Evidence Reference
GO:0000166 Function Nucleotide binding IEA
GO:0002953 Function 5'-deoxynucleotidase activity IDA 22997138, 34403084
GO:0002953 Function 5'-deoxynucleotidase activity IEA
GO:0005515 Function Protein binding IPI 32296183
GO:0005654 Component Nucleoplasm IDA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
129190 8021 ENSG00000135318
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
P21589
Protein name 5'-nucleotidase (5'-NT) (EC 3.1.3.35) (EC 3.1.3.5) (EC 3.1.3.89) (EC 3.1.3.91) (EC 3.1.3.99) (5'-deoxynucleotidase) (Ecto-5'-nucleotidase) (IMP-specific 5'-nucleotidase) (Thymidylate 5'-phosphatase) (CD antigen CD73)
Protein function Catalyzes the hydrolysis of nucleotide monophosphates, releasing inorganic phosphate and the corresponding nucleoside, with AMP being the preferred substrate (PubMed:21933152, PubMed:22997138, PubMed:23142347, PubMed:24887587, PubMed:34403084).
PDB 4H1S , 4H1Y , 4H2B , 4H2F , 4H2G , 4H2I , 6HXW , 6S7F , 6S7H , 6TVE , 6TVG , 6TVX , 6TW0 , 6TWA , 6TWF , 6VC9 , 6VCA , 6XUE , 6XUG , 6XUQ , 6YE1 , 6YE2 , 6Z9B , 6Z9D , 7BBJ , 7JV8 , 7JV9 , 7P9N , 7P9R , 7P9T , 7PA4 , 7PB5 , 7PBA , 7PBB , 7PBY , 7PCP , 7PD9 , 7QGA , 7QGL , 7QGM , 7QGO , 8ZNZ
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00149 Metallophos 29 246 Calcineurin-like phosphoesterase Domain
PF02872 5_nucleotid_C 338 513 Domain
Sequence
Sequence length 574
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Purine metabolism
Pyrimidine metabolism
Nicotinate and nicotinamide metabolism
Metabolic pathways
Nucleotide metabolism
  Nicotinate metabolism
Pyrimidine catabolism
Purine catabolism
Purinergic signaling in leishmaniasis infection
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
6
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Hereditary arterial and articular multiple calcification syndrome Pathogenic; Likely pathogenic rs373328681, rs387906620, rs774200574 RCV000022533
RCV000022534
RCV000022535
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
NT5E-related disorder Likely pathogenic rs1769796270, rs774200574 RCV004552466
RCV004549385
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
CALCIFICATION OF JOINTS AND ARTERIES CTD, Disgenet, HPO
CTD, Disgenet, HPO
CTD, Disgenet, HPO
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
LIVER CIRRHOSIS, EXPERIMENTAL CTD
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
NEUROBLASTOMA CTD
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
STOMACH NEOPLASMS CTD
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Acute lymphocytic leukemia Lymphocytic Leukemia BEFREE 27718302, 29530508
★☆☆☆☆
Found in Text Mining only
Acute monocytic leukemia Monocytic Leukemia BEFREE 31014364, 31309149
★☆☆☆☆
Found in Text Mining only
Acute otitis media Otitis media BEFREE 28941966, 30733549
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma Adenocarcinoma BEFREE 28060732
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma of rectum Adenocarcinoma Of Rectum BEFREE 25677906
★☆☆☆☆
Found in Text Mining only
Adult Acute Lymphocytic Leukemia Lymphocytic Leukemia BEFREE 29530508
★☆☆☆☆
Found in Text Mining only
Adult Diffuse Large B-Cell Lymphoma B-cell Lymphoma BEFREE 30664812
★☆☆☆☆
Found in Text Mining only
Adult Medulloblastoma Medulloblastoma BEFREE 23094051, 26491983
★☆☆☆☆
Found in Text Mining only
Agammaglobulinemia Agammaglobulinemia BEFREE 27864
★☆☆☆☆
Found in Text Mining only
Agammaglobulinemia Agammaglobulinemia Pubtator 2843575 Associate
★☆☆☆☆
Found in Text Mining only