Gene Gene information from NCBI Gene database.
Entrez ID 4851
Gene name Notch receptor 1
Gene symbol NOTCH1
Synonyms (NCBI Gene)
AOS5AOVD1TAN1hN1
Chromosome 9
Chromosome location 9q34.3
Summary This gene encodes a member of the NOTCH family of proteins. Members of this Type I transmembrane protein family share structural characteristics including an extracellular domain consisting of multiple epidermal growth factor-like (EGF) repeats, and an in
SNPs SNP information provided by dbSNP.
71
SNP ID Visualize variation Clinical significance Consequence
rs41309764 G>A Pathogenic Stop gained, coding sequence variant
rs41309766 G>- Pathogenic Frameshift variant, coding sequence variant
rs61755997 G>A Pathogenic, likely-benign, uncertain-significance Missense variant, coding sequence variant
rs182330532 G>A Conflicting-interpretations-of-pathogenicity, uncertain-significance Missense variant, coding sequence variant
rs199793164 G>A Conflicting-interpretations-of-pathogenicity Coding sequence variant, synonymous variant
miRNA miRNA information provided by mirtarbase database.
269
miRTarBase ID miRNA Experiments Reference
MIRT002875 hsa-miR-34a-5p ReviewMicroarray 19461653
MIRT002875 hsa-miR-34a-5p ReviewMicroarray 19461653
MIRT004424 hsa-miR-326 Western blotLuciferase reporter assay 19955368
MIRT004424 hsa-miR-326 Western blotLuciferase reporter assay 19955368
MIRT002875 hsa-miR-34a-5p Luciferase reporter assayqRT-PCRWestern blot 20351093
Transcription factors Transcription factors information provided by TRRUST V2 database.
2
Transcription factor Regulation Reference
KLF5 Activation 21868761
SIRT1 Repression 23028940
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
328
GO ID Ontology Definition Evidence Reference
GO:0000122 Process Negative regulation of transcription by RNA polymerase II IEA
GO:0000122 Process Negative regulation of transcription by RNA polymerase II IMP 17984306
GO:0000122 Process Negative regulation of transcription by RNA polymerase II ISS
GO:0000139 Component Golgi membrane IEA
GO:0000139 Component Golgi membrane TAS
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
190198 7881 ENSG00000148400
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
P46531
Protein name Neurogenic locus notch homolog protein 1 (Notch 1) (hN1) (Translocation-associated notch protein TAN-1) [Cleaved into: Notch 1 extracellular truncation (NEXT); Notch 1 intracellular domain (NICD)]
Protein function Functions as a receptor for membrane-bound ligands Jagged-1 (JAG1), Jagged-2 (JAG2) and Delta-1 (DLL1) to regulate cell-fate determination. Upon ligand activation through the released notch intracellular domain (NICD) it forms a transcriptional
PDB 1PB5 , 1TOZ , 1YYH , 2F8X , 2F8Y , 2HE0 , 2VJ3 , 3ETO , 3I08 , 3L95 , 3NBN , 3V79 , 4CUD , 4CUE , 4CUF , 4D0E , 4D0F , 5FM9 , 5FMA , 5KZO , 5L0R , 5UB5 , 6IDF , 6PY8 , 8OR5 , 8ORY , 8ORZ , 9B3G , 9B3N
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00008 EGF 63 97 EGF-like domain Domain
PF00008 EGF 106 137 EGF-like domain Domain
PF00008 EGF 144 174 EGF-like domain Domain
PF07645 EGF_CA 178 219 Calcium-binding EGF domain Domain
PF00008 EGF 222 253 EGF-like domain Domain
PF00008 EGF 261 291 EGF-like domain Domain
PF07645 EGF_CA 295 335 Calcium-binding EGF domain Domain
PF00008 EGF 339 369 EGF-like domain Domain
PF07645 EGF_CA 412 450 Calcium-binding EGF domain Domain
PF00008 EGF 456 486 EGF-like domain Domain
PF00008 EGF 494 524 EGF-like domain Domain
PF00008 EGF 532 562 EGF-like domain Domain
PF00008 EGF 570 599 EGF-like domain Domain
PF00008 EGF 607 637 EGF-like domain Domain
PF00008 EGF 645 673 EGF-like domain Domain
PF00008 EGF 682 712 EGF-like domain Domain
PF00008 EGF 720 749 EGF-like domain Domain
PF00008 EGF 757 787 EGF-like domain Domain
PF00008 EGF 795 825 EGF-like domain Domain
PF00008 EGF 833 865 EGF-like domain Domain
PF07645 EGF_CA 869 906 Calcium-binding EGF domain Domain
PF00008 EGF 911 941 EGF-like domain Domain
PF12661 hEGF 992 1013 Human growth factor-like EGF Domain
PF00008 EGF 1025 1055 EGF-like domain Domain
PF00008 EGF 1063 1093 EGF-like domain Domain
PF00008 EGF 1111 1141 EGF-like domain Domain
PF00008 EGF 1149 1179 EGF-like domain Domain
PF00008 EGF 1187 1217 EGF-like domain Domain
PF00008 EGF 1225 1263 EGF-like domain Domain
PF00008 EGF 1311 1344 EGF-like domain Domain
PF12661 hEGF 1357 1375 Human growth factor-like EGF Domain
PF00066 Notch 1446 1480 LNR domain Domain
PF00066 Notch 1487 1522 LNR domain Domain
PF00066 Notch 1525 1562 LNR domain Domain
PF06816 NOD 1566 1621 NOTCH protein Family
PF07684 NODP 1671 1729 NOTCH protein Family
PF00023 Ank 1880 1926 Ankyrin repeat Repeat
PF13637 Ank_4 1928 1981 Repeat
PF12796 Ank_2 1970 2058 Ankyrin repeats (3 copies) Repeat
PF12796 Ank_2 1999 2092 Ankyrin repeats (3 copies) Repeat
PF11936 DUF3454 2479 2540 Domain of unknown function (DUF3454) Family
Tissue specificity TISSUE SPECIFICITY: In fetal tissues most abundant in spleen, brain stem and lung. Also present in most adult tissues where it is found mainly in lymphoid tissues.
Sequence
MPPLLAPLLCLALLPALAARGPRCSQPGETCLNGGKCEAANGTEACVCGGAFVGPRCQDP
NPCLSTPCKNAGTCHVVDRRGVADYACSCALGFSGPLCLTPLDNACLTNPCRNGGTCDLL
TLTEYKCRCPPGWSGKS
CQQADPCASNPCANGGQCLPFEASYICHCPPSFHGPTCRQDVN
ECGQKPGLCRHGGTCHNEVGSYRCVCRATHTGPNCERPY
VPCSPSPCQNGGTCRPTGDVT
HECACLPGFTGQN
CEENIDDCPGNNCKNGGACVDGVNTYNCRCPPEWTGQYCTEDVDECQ
LMPNACQNGGTCHNTHGGYNCVCVNGWTGEDCSEN
IDDCASAACFHGATCHDRVASFYCE
CPHGRTGLL
CHLNDACISNPCNEGSNCDTNPVNGKAICTCPSGYTGPACSQDVDECSLGA
NPCEHAGKCINTLGSFECQCLQGYTGPRCE
IDVNECVSNPCQNDATCLDQIGEFQCICMP
GYEGVH
CEVNTDECASSPCLHNGRCLDKINEFQCECPTGFTGHLCQYDVDECASTPCKNG
AKCLDGPNTYTCVCTEGYTGTH
CEVDIDECDPDPCHYGSCKDGVATFTCLCRPGYTGHHC
ETNINECSSQPCRHGGTCQDRDNAYLCFCLKGTTGPNCEINLDDCASSPCDSGTCLDKID
GYECACEPGYTGS
MCNINIDECAGNPCHNGGTCEDGINGFTCRCPEGYHDPTCLSEVNEC
NSNPCVHGACRDSLNGYKCDCDPGWSGTN
CDINNNECESNPCVNGGTCKDMTSGYVCTCR
EGFSGPN
CQTNINECASNPCLNQGTCIDDVAGYKCNCLLPYTGATCEVVLAPCAPSPCRN
GGECRQSEDYESFSCVCPTGWQGQT
CEVDINECVLSPCRHGASCQNTHGGYRCHCQAGYS
GRNCET
DIDDCRPNPCHNGGSCTDGINTAFCDCLPGFRGTFCEEDINECASDPCRNGANC
TDCVDSYTCTCPAGFSGIHCENNTPDCTESSCFNGGTCVDGINSFTCLCPPGFTGSYCQH
DVNECDSQPCLHGGTCQDGCGSYRCTCPQGYTGPNCQNLVHWCDSSPCKNGGKCWQTHTQ
YRCECPSGWTGLY
CDVPSVSCEVAAQRQGVDVARLCQHGGLCVDAGNTHHCRCQAGYTGS
Y
CEDLVDECSPSPCQNGATCTDYLGGYSCKCVAGYHGVNCSEEIDECLSHPCQNGGTCLD
LPNTYKCSCPRGTQGVH
CEINVDDCNPPVDPVSRSPKCFNNGTCVDQVGGYSCTCPPGFV
GER
CEGDVNECLSNPCDARGTQNCVQRVNDFHCECRAGHTGRRCESVINGCKGKPCKNGG
TCAVASNTARGFICKCPAGFEGAT
CENDARTCGSLRCLNGGTCISGPRSPTCLCLGPFTG
PECQFPASSPCLGGNPCYNQGTCEPTSESPFYRCLCPAKFNGLLCHILDYSFGGGAGRDI
PPPLIEEACELPECQEDAGNKVCSLQCNNHACGWDGGDCSLNFNDPWKNCTQSLQCWKYF
SDGHCDSQCNSAGCLFDGFDCQ
RAEGQCNPLYDQYCKDHFSDGHCDQGCNSAECEWDGLD
CA
EHVPERLAAGTLVVVVLMPPEQLRNSSFHFLRELSRVLHTNVVFKRDAHGQQMIFPYY
G
REEELRKHPIKRAAEGWAAPDALLGQVKASLLPGGSEGGRRRRELDPMDVRGSIVYLEI
DNRQCVQASSQCFQSATDVAAFLGALASLGSLNIPYKIEAVQSETVEPP
PPAQLHFMYVA
AAAFVLLFFVGCGVLLSRKRRRQHGQLWFPEGFKVSEASKKKRREPLGEDSVGLKPLKNA
SDGALMDDNQNEWGDEDLETKKFRFEEPVVLPDLDDQTDHRQWTQQHLDAADLRMSAMAP
TPPQGEVDADCMDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASL
HNQTDR
TGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQIL
I
RNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNN
VDAAVVLLKNGANKDMQN
NREETPLFLAAREGSYETAKVLLDHFANRDITDH
MDRLPRDI
AQERMHHDIVRLLDEYNLVRSPQLHGAPLGGTPTLSPPLCSPNGYLGSLKPGVQGKKVRK
PSSKGLACGSKEAKDLKARRKKSQDGKGCLLDSSGMLSPVDSLESPHGYLSDVASPPLLP
SPFQQSPSVPLNHLPGMPDTHLGIGHLNVAAKPEMAALGGGGRLAFETGPPRLSHLPVAS
GTSTVLGSSSGGALNFTVGGSTSLNGQCEWLSRLQSGMVPNQYNPLRGSVAPGPLSTQAP
SLQHGMVGPLHSSLAASALSQMMSYQGLPSTRLATQPHLVQTQQVQPQNLQMQQQNLQPA
NIQQQQSLQPPPPPPQPHLGVSSAASGHLGRSFLSGEPSQADVQPLGPSSLAVHTILPQE
SPALPTSLPSSLVPPVTAAQFLTPPSQHSYSSPVDNTPSHQLQVPEHPFLTPSPESPDQW
SSSSPHSNVSDWSEGVSSPP
TSMQSQIARIPEAFK
Sequence length 2555
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Endocrine resistance
Notch signaling pathway
Th1 and Th2 cell differentiation
Thyroid hormone signaling pathway
Prion disease
Human papillomavirus infection
Pathways in cancer
MicroRNAs in cancer
Breast cancer
  Pre-NOTCH Transcription and Translation
Pre-NOTCH Processing in Golgi
NOTCH1 Intracellular Domain Regulates Transcription
Activated NOTCH1 Transmits Signal to the Nucleus
Constitutive Signaling by NOTCH1 PEST Domain Mutants
Loss of Function of FBXW7 in Cancer and NOTCH1 Signaling
Constitutive Signaling by NOTCH1 t(7;9)(NOTCH1:M1580_K2555) Translocation Mutant
Constitutive Signaling by NOTCH1 HD Domain Mutants
Constitutive Signaling by NOTCH1 HD+PEST Domain Mutants
Notch-HLH transcription pathway
Defective LFNG causes SCDO3
RUNX3 regulates NOTCH signaling
NOTCH3 Intracellular Domain Regulates Transcription
NOTCH4 Intracellular Domain Regulates Transcription
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
105
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Abnormal cardiovascular system morphology Pathogenic rs2540421985 RCV002306280
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Adams-Oliver syndrome Pathogenic rs2133337500 RCV001693505
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Adams-Oliver syndrome 5 Pathogenic; Likely pathogenic rs2133339381, rs2133339552, rs2133363840, rs1036363986, rs2133361331, rs2133358321, rs2133372831, rs2133377982, rs1843252720, rs587781259, rs587777735, rs587777736, rs2133345379, rs779058908, rs2133369937
View all (47 more)
RCV001387441
RCV001385022
RCV001388533
RCV001999794
RCV001975775
View all (57 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Aortic valve disease 1 Likely pathogenic; Pathogenic rs779058908, rs863224901, rs1057515423, rs1057515422, rs1271941628, rs2540421105, rs748813647, rs41309764, rs41309766, rs757495549, rs2133325416, rs2540421448, rs2540452961, rs1057518661, rs1554826746
View all (2 more)
RCV004782908
RCV000198418
RCV000408649
RCV000408651
RCV003313018
View all (12 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
Abnormal vena cava morphology Conflicting classifications of pathogenicity ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Abnormality of connective tissue Uncertain significance ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Acute myeloid leukemia Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Adams-Oliver syndrome 2 Conflicting classifications of pathogenicity ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
22q13.3 Deletion Syndrome 22q13.3 deletion syndrome BEFREE 27235670
★☆☆☆☆
Found in Text Mining only
Acquired porencephaly Acquired Porencephaly HPO_DG
★☆☆☆☆
Found in Text Mining only
Acute Erythroblastic Leukemia Erythroblastic Leukemia BEFREE 10227380, 22581828, 30940846
★☆☆☆☆
Found in Text Mining only
Acute leukemia Leukemia BEFREE 12539049, 18184405, 18193087, 18281529, 20730882
★☆☆☆☆
Found in Text Mining only
Acute lymphocytic leukemia Lymphocytic Leukemia BEFREE 15694671, 16688224, 17329966, 17585052, 19091404, 19631984, 19792972, 19794083, 21479985, 22393458, 23908464, 24122995, 24277457, 25194570, 25942645
View all (4 more)
★☆☆☆☆
Found in Text Mining only
Acute lymphocytic leukemia Lymphocytic Leukemia GENOMICS_ENGLAND_DG 21642962
★☆☆☆☆
Found in Text Mining only
Acute monocytic leukemia Monocytic Leukemia BEFREE 15694671, 31849496
★☆☆☆☆
Found in Text Mining only
Acute myelomonocytic leukemia Myelomonocytic Leukemia BEFREE 19846937
★☆☆☆☆
Found in Text Mining only
Acute Promyelocytic Leukemia Promyelocytic Leukemia BEFREE 15058751
★☆☆☆☆
Found in Text Mining only
Acute Promyelocytic Leukemia Promyelocytic Leukemia LHGDN 15058751
★☆☆☆☆
Found in Text Mining only