Gene Gene information from NCBI Gene database.
Entrez ID 4654
Gene name Myogenic differentiation 1
Gene symbol MYOD1
Synonyms (NCBI Gene)
CMYO17CMYP17MYF3MYODMYODRIFPUMbHLHc1
Chromosome 11
Chromosome location 11p15.1
Summary This gene encodes a nuclear protein that belongs to the basic helix-loop-helix family of transcription factors and the myogenic factors subfamily. It regulates muscle cell differentiation by inducing cell cycle arrest, a prerequisite for myogenic initiati
SNPs SNP information provided by dbSNP.
1
SNP ID Visualize variation Clinical significance Consequence
rs1179926739 C>-,CC Pathogenic Frameshift variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
43
miRTarBase ID miRNA Experiments Reference
MIRT003570 hsa-miR-1-3p Review 19815577
MIRT019143 hsa-miR-335-5p Microarray 18185580
MIRT043226 hsa-miR-324-5p CLASH 23622248
MIRT1170234 hsa-miR-1275 CLIP-seq
MIRT1170235 hsa-miR-29a CLIP-seq
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
96
GO ID Ontology Definition Evidence Reference
GO:0000381 Process Regulation of alternative mRNA splicing, via spliceosome IEA
GO:0000785 Component Chromatin IEA
GO:0000785 Component Chromatin ISA
GO:0000785 Component Chromatin ISS
GO:0000791 Component Euchromatin IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
159970 7611 ENSG00000129152
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
P15172
Protein name Myoblast determination protein 1 (Class C basic helix-loop-helix protein 1) (bHLHc1) (Myogenic factor 3) (Myf-3)
Protein function Acts as a transcriptional activator that promotes transcription of muscle-specific target genes and plays a role in muscle differentiation. Together with MYF5 and MYOG, co-occupies muscle-specific gene promoter core region during myogenesis. Ind
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF01586 Basic 27 109 Myogenic Basic domain Family
PF00010 HLH 110 161 Helix-loop-helix DNA-binding domain Domain
PF12232 Myf5 191 259 Myogenic determination factor 5 Family
Sequence
Sequence length 320
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Spinocerebellar ataxia   Myogenesis
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
10
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Arthrogryposis multiplex congenita Pathogenic rs1179926739 RCV000855714
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Autosomal dominant centronuclear myopathy Pathogenic rs1179926739 RCV000855714
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Myopathy, congenital, with diaphragmatic defects, respiratory insufficiency, and dysmorphic facies Pathogenic rs1179926739, rs147517396, rs768652299 RCV001253807
RCV001253805
RCV001253806
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
CONGENITAL MYOPATHY 17 HPO
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
FETAL AKINESIA DEFORMATION SEQUENCE Orphanet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
FETAL AKINESIA DEFORMATION SEQUENCE 1 GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
HODGKINS LYMPHOMA GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Adenocarcinoma Adenocarcinoma BEFREE 11717336, 9066689
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma of lung (disorder) Lung adenocarcinoma BEFREE 25573098
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma of prostate Prostate adenocarcinoma BEFREE 21631298
★☆☆☆☆
Found in Text Mining only
Adenoma Adenoma BEFREE 9066689
★☆☆☆☆
Found in Text Mining only
Adenoma of large intestine Colorectal adenoma BEFREE 9066689
★☆☆☆☆
Found in Text Mining only
Akinesia Akinesia HPO_DG
★☆☆☆☆
Found in Text Mining only
Alveolar rhabdomyosarcoma Alveolar Rhabdomyosarcoma BEFREE 29844345, 9546368
★☆☆☆☆
Found in Text Mining only
Alveolar Soft Part Sarcoma Alveolar Sarcoma BEFREE 10838498, 1656801
★☆☆☆☆
Found in Text Mining only
Amyotrophic Lateral Sclerosis Amyotrophic Lateral Sclerosis BEFREE 27195289
★☆☆☆☆
Found in Text Mining only
Amyotrophic Lateral Sclerosis Amyotrophic lateral sclerosis Pubtator 27195289 Associate
★☆☆☆☆
Found in Text Mining only