Gene Gene information from NCBI Gene database.
Entrez ID 4645
Gene name Myosin VB
Gene symbol MYO5B
Synonyms (NCBI Gene)
DIAR2MVID1PFIC10
Chromosome 18
Chromosome location 18q21.1
Summary The protein encoded by this gene, together with other proteins, may be involved in plasma membrane recycling. Mutations in this gene are associated with microvillous inclusion disease. [provided by RefSeq, Sep 2009]
SNPs SNP information provided by dbSNP.
13
SNP ID Visualize variation Clinical significance Consequence
rs121908103 A>C,G Pathogenic Missense variant, coding sequence variant
rs121908104 C>T Pathogenic Stop gained, coding sequence variant
rs121908105 G>A,C,T Pathogenic Missense variant, coding sequence variant
rs121908106 G>A Pathogenic Missense variant, coding sequence variant
rs192207329 C>T Conflicting-interpretations-of-pathogenicity Missense variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
293
miRTarBase ID miRNA Experiments Reference
MIRT027199 hsa-miR-103a-3p Sequencing 20371350
MIRT032002 hsa-miR-16-5p Sequencing 20371350
MIRT656022 hsa-miR-1304-3p HITS-CLIP 23824327
MIRT656021 hsa-miR-1229-3p HITS-CLIP 23824327
MIRT656020 hsa-miR-587 HITS-CLIP 23824327
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
27
GO ID Ontology Definition Evidence Reference
GO:0000146 Function Microfilament motor activity IBA
GO:0000146 Function Microfilament motor activity TAS
GO:0000166 Function Nucleotide binding IEA
GO:0003091 Process Renal water homeostasis TAS
GO:0003774 Function Cytoskeletal motor activity IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
606540 7603 ENSG00000167306
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q9ULV0
Protein name Unconventional myosin-Vb
Protein function May be involved in vesicular trafficking via its association with the CART complex. The CART complex is necessary for efficient transferrin receptor recycling but not for EGFR degradation. Required in a complex with RAB11A and RAB11FIP2 for the
PDB 4J5M , 4LNZ , 4LWZ , 4LX0
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00063 Myosin_head 71 749 Myosin head (motor domain) Domain
PF00612 IQ 765 785 IQ calmodulin-binding motif Motif
PF00612 IQ 788 808 IQ calmodulin-binding motif Motif
PF00612 IQ 813 833 IQ calmodulin-binding motif Motif
PF00612 IQ 836 856 IQ calmodulin-binding motif Motif
PF00612 IQ 861 881 IQ calmodulin-binding motif Motif
PF00612 IQ 884 904 IQ calmodulin-binding motif Motif
PF01843 DIL 1680 1783 DIL domain Family
Sequence
MSVGELYSQCTRVWIPDPDEVWRSAELTKDYKEGDKSLQLRLEDETILEYPIDVQRNQLP
FLRNPDILVGENDLTALSYLHEPAVLHNLKVRFLESNHIYTYCGIVLVAINPYEQLPIYG
QDVIYTYSGQNMGDMDPHIFAVAEEAYKQMARDEKNQSIIVSGESGAGKTVSAKYAMRYF
ATVGGSASETNIEEKVLASSPIMEAIGNAKTTRNDNSSRFGKYIQIGFDKRYHIIGANMR
TYLLEKSRVVFQADDERNYHIFYQLCAAAGLPEFKELALTSAEDFFYTSQGGDTSIEGVD
DAEDFEKTRQAFTLLGVKESHQMSIFKIIASILHLGSVAIQAERDGDSCSISPQDVYLSN
FCRLLGVEHSQMEHWLCHRKLVTTSETYVKTMSLQQVINARNALAKHIYAQLFGWIVEHI
NKALHTSLKQHSFIGVLDIYGFETFEVNSFEQFCINYANEKLQQQFNSHVFKLEQEEYMK
EQIPWTLIDFYDNQPCIDLIEAKLGILDLLDEECKVPKGTDQNWAQKLYDRHSSSQHFQK
PRMSNTAFIIVHFADKVEYLSDGFLEKNRDTVYEEQINILKASKFPLVADLFHDDKDPVP
ATTPGKGSSSKISVRSARPPMKVSNKEHKKTVGHQFRTSLHLLMETLNATTPHYVRCIKP
NDEKLPFHFDPKRAVQQLRACGVLETIRISAAGYPSRWAYHDFFNRYRVLVKKRELANTD
KKAICRSVLENLIKDPDKFQFGRTKIFFR
AGQVAYLEKLRADKFRTATIMIQKTVRGWLQ
KVKYH
RLKGATLTLQRYCRGHLARRLAEHLRRIRAAVVLQKHYRMQRARQAYQRVRRAAV
VIQAFTRAMFVRRTYR
QVLMEHKATTIQKHVRGWMARRHFQRLRDAAIVIQCAFRMLKAR
RELK
ALRIEARSAEHLKRLNVGMENKVVQLQRKIDEQNKEFKTLSEQLSVTTSTYTMEVE
RLKKELVHYQQSPGEDTSLRLQEEVESLRTELQRAHSERKILEDAHSREKDELRKRVADL
EQENALLKDEKEQLNNQILCQSKDEFAQNSVKENLMKKELEEERSRYQNLVKEYSQLEQR
YDNLRDEMTIIKQTPGHRRNPSNQSSLESDSNYPSISTSEIGDTEDALQQVEEIGLEKAA
MDMTVFLKLQKRVRELEQERKKLQVQLEKREQQDSKKVQAEPPQTDIDLDPNADLAYNSL
KRQELESENKKLKNDLNELRKAVADQATQNNSSHGSPDSYSLLLNQLKLAHEELEVRKEE
VLILRTQIVSADQRRLAGRNAEPNINARSSWPNSEKHVDQEDAIEAYHGVCQTNSKTEDW
GYLNEDGELGLAYQGLKQVARLLEAQLQAQSLEHEEEVEHLKAQLEALKEEMDKQQQTFC
QTLLLSPEAQVEFGVQQEISRLTNENLDLKELVEKLEKNERKLKKQLKIYMKKAQDLEAA
QALAQSERKRHELNRQVTVQRKEKDFQGMLEYHKEDEALLIRNLVTDLKPQMLSGTVPCL
PAYILYMCIRHADYTNDDLKVHSLLTSTINGIKKVLKKHNDDFEMTSFWLSNTCRLLHCL
KQYSGDEGFMTQNTAKQNEHCLKNFDLTEYRQVLSDLSIQIYQQLIKIAEGVLQPMIVSA
MLENESIQGLSGVKPTGYRKRSSSMADGDNSYCLEAIIRQMNAFHTVMCDQGLDPEIILQ
VFKQLFYMINAVTLNNLLLRKDVCSWSTGMQLRYNISQLEEWLRGRNLHQSGAVQTMEPL
IQAAQLLQLKKKTQEDAEAICSLCTSLSTQQIVKILNLYTPLN
EFEERVTVAFIRTIQAQ
LQERNDPQQLLLDAKHMFPVLFPFNPSSLTMDSIHIPACLNLEFLNEV
Sequence length 1848
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Motor proteins
Pathogenic Escherichia coli infection
  Vasopressin regulates renal water homeostasis via Aquaporins
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
38
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Cholestasis, progressive familial intrahepatic, 10 Pathogenic; Likely pathogenic rs372682296, rs2144150424, rs2144383876, rs2144094082, rs776708126, rs1258766593, rs757745239, rs575729461 RCV002248410
RCV002248412
RCV002248413
RCV002248425
RCV002248427
View all (3 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Congenital microvillous atrophy Pathogenic; Likely pathogenic rs370647174, rs1598870169, rs2144194879, rs1014035512, rs2144390075, rs1271807828, rs1264355256, rs2144150824, rs779188563, rs2144417768, rs2144048741, rs2144041940, rs760515993, rs1568025953, rs727505395
View all (17 more)
RCV005000526
RCV001332766
RCV001821871
RCV001733536
RCV001808853
View all (27 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
DIARRHEA 2, WITH MICROVILLUS ATROPHY AND CHOLESTASIS Pathogenic rs2025722754, rs1369547753, rs751000651, rs2144244071 RCV002248419
RCV002248420
RCV002248423
RCV002248424
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
MYO5B-related disorder Likely pathogenic rs1555648414 RCV003419841
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
Acute myeloid leukemia Likely benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
AMPHETAMINE OR RELATED ACTING SYMPATHOMIMETIC ABUSE Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
AMPHETAMINE-RELATED DISORDERS CTD
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Cholangiocarcinoma Conflicting classifications of pathogenicity ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Adrenal Gland Pheochromocytoma Adrenal Gland Pheochromocytoma BEFREE 26650627
★☆☆☆☆
Found in Text Mining only
Adult Fanconi syndrome Fanconi syndrome BEFREE 22441677
★☆☆☆☆
Found in Text Mining only
Atrophy Atrophy Pubtator 24413175 Associate
★☆☆☆☆
Found in Text Mining only
Attention deficit hyperactivity disorder Attention Deficit Hyperactivity Disorder BEFREE 21276201
★☆☆☆☆
Found in Text Mining only
Bipolar Disorder Bipolar Disorder GWASDB_DG 18317468
★☆☆☆☆
Found in Text Mining only
Bipolar Disorder Bipolar disorder Pubtator 18317468, 21480485 Associate
★☆☆☆☆
Found in Text Mining only
Bipolar Disorder Bipolar Disorder BEFREE 23561489
★☆☆☆☆
Found in Text Mining only
Bulbo-Spinal Atrophy, X-Linked Bulbospinal Atrophy, X-Linked BEFREE 24892806
★☆☆☆☆
Found in Text Mining only
Cholestasis Cholestasis GENOMICS_ENGLAND_DG 18724368
★☆☆☆☆
Found in Text Mining only
Cholestasis Cholestasis BEFREE 24375397, 27532546, 28027573
★☆☆☆☆
Found in Text Mining only