Gene Gene information from NCBI Gene database.
Entrez ID 462
Gene name Serpin family C member 1
Gene symbol SERPINC1
Synonyms (NCBI Gene)
AT3AT3DATIIIATIII-R2ATIII-T1ATIII-T2THPH7
Chromosome 1
Chromosome location 1q25.1
Summary The protein encoded by this gene, antithrombin III, is a plasma protease inhibitor and a member of the serpin superfamily. This protein inhibits thrombin as well as other activated serine proteases of the coagulation system, and it regulates the blood coa
SNPs SNP information provided by dbSNP.
42
SNP ID Visualize variation Clinical significance Consequence
rs2227624 A>T Conflicting-interpretations-of-pathogenicity, uncertain-significance 5 prime UTR variant, coding sequence variant, missense variant
rs28929469 G>A Pathogenic, likely-pathogenic Coding sequence variant, missense variant
rs121909547 G>A,T Likely-pathogenic, pathogenic Missense variant, coding sequence variant
rs121909551 G>A Pathogenic-likely-pathogenic, likely-benign Missense variant, coding sequence variant
rs121909552 C>T Conflicting-interpretations-of-pathogenicity, likely-benign Missense variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
89
miRTarBase ID miRNA Experiments Reference
MIRT653922 hsa-miR-1306-5p HITS-CLIP 23824327
MIRT653921 hsa-miR-130b-5p HITS-CLIP 23824327
MIRT653920 hsa-miR-3124-3p HITS-CLIP 23824327
MIRT653919 hsa-miR-30a-5p HITS-CLIP 23824327
MIRT653918 hsa-miR-30b-5p HITS-CLIP 23824327
Transcription factors Transcription factors information provided by TRRUST V2 database.
7
Transcription factor Regulation Reference
CEBPA Activation 8910619
FOXA1 Repression 8910619
FOXA2 Repression 8910619
HNF4A Activation 8910619
NR2F1 Repression 8910619
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
23
GO ID Ontology Definition Evidence Reference
GO:0002020 Function Protease binding IPI 15853774
GO:0004867 Function Serine-type endopeptidase inhibitor activity IBA
GO:0004867 Function Serine-type endopeptidase inhibitor activity IEA
GO:0004867 Function Serine-type endopeptidase inhibitor activity NAS 12878203
GO:0005515 Function Protein binding IPI 2013320, 12878203, 22582013, 28743742
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
107300 775 ENSG00000117601
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
P01008
Protein name Antithrombin-III (ATIII) (Serpin C1)
Protein function Most important serine protease inhibitor in plasma that regulates the blood coagulation cascade (PubMed:15140129, PubMed:15853774). AT-III inhibits thrombin, matriptase-3/TMPRSS7, as well as factors IXa, Xa and XIa (PubMed:15140129). Its inhibit
PDB 1ANT , 1ATH , 1AZX , 1BR8 , 1DZG , 1DZH , 1E03 , 1E04 , 1E05 , 1JVQ , 1LK6 , 1NQ9 , 1OYH , 1R1L , 1SR5 , 1T1F , 1TB6 , 2ANT , 2B4X , 2B5T , 2BEH , 2GD4 , 2HIJ , 2ZNH , 3EVJ , 3KCG , 4EB1
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00079 Serpin 85 461 Serpin (serine protease inhibitor) Domain
Tissue specificity TISSUE SPECIFICITY: Found in plasma.
Sequence
Sequence length 464
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Complement and coagulation cascades   Intrinsic Pathway of Fibrin Clot Formation
Common Pathway of Fibrin Clot Formation
Regulation of Insulin-like Growth Factor (IGF) transport and uptake by Insulin-like Growth Factor Binding Proteins (IGFBPs)
Post-translational protein phosphorylation
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
29
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Abnormal thrombosis Pathogenic rs1487411568 RCV000852017
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Coloboma of optic nerve Pathogenic rs2526582621 RCV006259483
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Deep venous thrombosis Pathogenic rs2227624, rs121909567, rs1572092099 RCV000852240
RCV000851769
RCV000852038
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Hepatocellular carcinoma Likely pathogenic rs1572090079 RCV005906946
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
Abnormal bleeding Conflicting classifications of pathogenicity ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ANGINA, UNSTABLE Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ANTITHROMBIN III DEFICIENCY CTD, Disgenet, HPO
CTD, Disgenet, HPO
CTD, Disgenet, HPO
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
BLOOD COAGULATION DISORDERS CTD, Disgenet
CTD, Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Acth-Independent Macronodular Adrenal Hyperplasia Cushing`s Syndrome BEFREE 28226363
★☆☆☆☆
Found in Text Mining only
Activated Protein C Resistance Activated Protein C Resistance BEFREE 10414451, 12473703, 12571435, 15309526, 15609280, 20868443, 25771983, 8733870, 9065198, 9158617, 9372103, 9555645
★☆☆☆☆
Found in Text Mining only
Acute Coronary Syndrome Coronary Syndrome CTD_human_DG 7923645
★☆☆☆☆
Found in Text Mining only
Acute lymphocytic leukemia Lymphocytic Leukemia BEFREE 28060110, 3472589
★☆☆☆☆
Found in Text Mining only
Acute pancreatitis Pancreatitis BEFREE 28222624
★☆☆☆☆
Found in Text Mining only
Adult Acute Lymphocytic Leukemia Lymphocytic Leukemia BEFREE 28060110
★☆☆☆☆
Found in Text Mining only
Alzheimer Disease Alzheimer disease Pubtator 8362984 Stimulate
★☆☆☆☆
Found in Text Mining only
Amyloid angiopathy Amyloid angiopathy Pubtator 8362984 Associate
★☆☆☆☆
Found in Text Mining only
Amyloidosis Amyloidosis BEFREE 8362984
★☆☆☆☆
Found in Text Mining only
Anemia Sickle Cell Sickle cell anemia Pubtator 23249216, 35822297 Associate
★☆☆☆☆
Found in Text Mining only