Gene Gene information from NCBI Gene database.
Entrez ID 4604
Gene name Myosin binding protein C1
Gene symbol MYBPC1
Synonyms (NCBI Gene)
CMYO16CMYP16LCCS4MYBPCCMYBPCSMYOTREMssMyBP-C
Chromosome 12
Chromosome location 12q23.2
Summary This gene encodes a member of the myosin-binding protein C family. Myosin-binding protein C family members are myosin-associated proteins found in the cross-bridge-bearing zone (C region) of A bands in striated muscle. The encoded protein is the slow skel
SNPs SNP information provided by dbSNP.
7
SNP ID Visualize variation Clinical significance Consequence
rs199628742 C>A,T Likely-benign, conflicting-interpretations-of-pathogenicity Intron variant
rs387906657 T>C Pathogenic Missense variant, coding sequence variant
rs397515422 C>T Pathogenic Stop gained, coding sequence variant
rs564856283 G>A,C Pathogenic Coding sequence variant, missense variant
rs1421405659 T>C,G Likely-pathogenic, pathogenic Missense variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
426
miRTarBase ID miRNA Experiments Reference
MIRT028918 hsa-miR-26b-5p Microarray 19088304
MIRT038283 hsa-miR-130b-5p CLASH 23622248
MIRT610065 hsa-miR-6515-3p HITS-CLIP 23824327
MIRT610064 hsa-miR-1236-3p HITS-CLIP 23824327
MIRT610063 hsa-miR-1285-3p HITS-CLIP 23824327
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
13
GO ID Ontology Definition Evidence Reference
GO:0003779 Function Actin binding IEA
GO:0005515 Function Protein binding IPI 23414517
GO:0005829 Component Cytosol TAS
GO:0007155 Process Cell adhesion IEA
GO:0008307 Function Structural constituent of muscle IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
160794 7549 ENSG00000196091
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q00872
Protein name Myosin-binding protein C, slow-type (Slow MyBP-C) (C-protein, skeletal muscle slow isoform)
Protein function Thick filament-associated protein located in the crossbridge region of vertebrate striated muscle a bands. Slow skeletal protein that binds to both myosin and actin (PubMed:31025394, PubMed:31264822). In vitro, binds to native thin filaments and
PDB 1X44 , 2DAV , 2YUV , 2YUW , 2YUX , 2YUZ , 2YXM
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF07679 I-set 59 159 Immunoglobulin I-set domain Domain
PF18362 THB 209 242 Tri-helix bundle domain Domain
PF07679 I-set 253 337 Immunoglobulin I-set domain Domain
PF07679 I-set 342 431 Immunoglobulin I-set domain Domain
PF07679 I-set 433 507 Immunoglobulin I-set domain Domain
PF07679 I-set 530 616 Immunoglobulin I-set domain Domain
PF00041 fn3 621 706 Fibronectin type III domain Domain
PF00041 fn3 719 822 Fibronectin type III domain Domain
PF07679 I-set 839 928 Immunoglobulin I-set domain Domain
PF00041 fn3 933 1016 Fibronectin type III domain Domain
PF07679 I-set 1047 1136 Immunoglobulin I-set domain Domain
Sequence
MPEPTKKEENEVPAPAPPPEEPSKEKEAGTTPAKDWTLVETPPGEEQAKQNANSQLSILF
IEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHS
RVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEV
HESTGTTPNIDIRSAFKRSGE
GQEDAGELDFSGLLKRREVKQQEEEPQVDVWELLKNAKPSEYEKIAFQYGITDLRGMLKR
LK
RMRREEKKSAAFAKILDPAYQVDKGGRVRFVVELADPKLEVKWYKNGQEIRPSTKYIF
EHKGCQRILFINNCQMTDDSEYYVTAGDEKCSTELFV
REPPIMVTKQLEDTTAYCGERVE
LECEVSEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTGG
QSSAKLSVDLK
PLKILTPLTDQTVNLGKEICLKCEISENIPGKWTKNGLPVQESDRLKVV
HKGRIHKLVIANALTEDEGDYVFAPDA
YNVTLPAKVHVIDPPKIILDGLDADNTVTVIAG
NKLRLEIPISGEPPPKAMWSRGDKAIMEGSGRIRTESYPDSSTLVIDIAERDDSGVYHIN
LKNEAGEAHASIKVKV
VDFPDPPVAPTVTEVGDDWCIMNWEPPAYDGGSPILGYFIERKK
KQSSRWMRLNFDLCKETTFEPKKMIEGVAYEVRIFAVNAIGISKPS
MPSRPFVPLAVTSP
PTLLTVDSVTDTTVTMRWRPPDHIGAAGLDGYVLEYCFEGSTSAKQSDENGEAAYDLPAE
DWIVANKDLIDKTKFTITGLPTDAKIFVRVKAVNAAGASEPK
YYSQPILVKEIIEPPKIR
IPRHLKQTYIRRVGEAVNLVIPFQGKPRPELTWKKDGAEIDKNQINIRNSETDTIIFIRK
AERSHSGKYDLQVKVDKFVETASIDIQI
IDRPGPPQIVKIEDVWGENVALTWTPPKDDGN
AAITGYTIQKADKKSMEWFTVIEHYHRTSATITELVIGNEYYFRVFSENMCGLSED
ATMT
KESAVIARDGKIYKNPVYEDFDFSEAPMFTQPLVNTYAIAGYNATLNCSVRGNPKPKITW
MKNKVAIVDDPRYRMFSNQGVCTLEIRKPSPYDGGTYCCKAVNDLGTVEIECKLEV
KVIA
Q
Sequence length 1141
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Cytoskeleton in muscle cells   Striated Muscle Contraction
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
23
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Abnormality of the musculature Likely pathogenic rs2135990843 RCV001814512
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Arthrogryposis, distal, type 1B Likely pathogenic; Pathogenic rs2547560732, rs387906657, rs387906658, rs1565943228 RCV002463392
RCV000022670
RCV000022671
RCV005626207
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Distal arthrogryposis Likely pathogenic rs1555242493 RCV000626822
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
MYBPC1-related disorder Likely pathogenic; Pathogenic rs1421405659, rs1565943228 RCV000626001
RCV000786058
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
ARTHROGRYPOSIS, DISTAL, TYPE 1 Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
BREAST CANCER GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
BREAST CARCINOMA GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
CONGENITAL MYOPATHY 16 Disgenet, HPO
Disgenet, HPO
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Arthrogryposis Arthrogryposis multiplex congenita BEFREE 25679999, 26661508, 31264822
★☆☆☆☆
Found in Text Mining only
Arthrogryposis Arthrogryposis Pubtator 25679999, 31264822, 38438057 Associate
★☆☆☆☆
Found in Text Mining only
Arthrogryposis Arthrogryposis multiplex congenita HPO_DG
★☆☆☆☆
Found in Text Mining only
ARTHROGRYPOSIS, DISTAL, TYPE 1 Distal arthrogryposis BEFREE 20045868, 23850728
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ARTHROGRYPOSIS, DISTAL, TYPE 1 Distal arthrogryposis ORPHANET_DG 20045868
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ARTHROGRYPOSIS, DISTAL, TYPE 1B Distal arthrogryposis UNIPROT_DG 20045868, 26661508
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
ARTHROGRYPOSIS, DISTAL, TYPE 1B Distal arthrogryposis GENOMICS_ENGLAND_DG 20045868, 22610851, 26661508
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
ARTHROGRYPOSIS, DISTAL, TYPE 1B Distal arthrogryposis CTD_human_DG
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
ARTHROGRYPOSIS, DISTAL, TYPE 1B Distal arthrogryposis CLINVAR_DG
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Breast Neoplasms Breast neoplasm Pubtator 35132338 Associate
★☆☆☆☆
Found in Text Mining only