Gene Gene information from NCBI Gene database.
Entrez ID 4597
Gene name Mevalonate diphosphate decarboxylase
Gene symbol MVD
Synonyms (NCBI Gene)
FP17780MDDaseMPDPOROK7
Chromosome 16
Chromosome location 16q24.2
Summary The enzyme mevalonate pyrophosphate decarboxylase catalyzes the conversion of mevalonate pyrophosphate into isopentenyl pyrophosphate in one of the early steps in cholesterol biosynthesis. It decarboxylates and dehydrates its substrate while hydrolyzing A
SNPs SNP information provided by dbSNP.
2
SNP ID Visualize variation Clinical significance Consequence
rs755948940 T>C Pathogenic Missense variant, coding sequence variant
rs761991070 A>G Pathogenic Missense variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
214
miRTarBase ID miRNA Experiments Reference
MIRT022326 hsa-miR-124-3p Microarray 18668037
MIRT029055 hsa-miR-26b-5p Microarray 19088304
MIRT738782 hsa-miR-103b CLIP-seq
MIRT738787 hsa-miR-1285 CLIP-seq
MIRT1166606 hsa-miR-129-3p CLIP-seq
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
28
GO ID Ontology Definition Evidence Reference
GO:0000166 Function Nucleotide binding IEA
GO:0004163 Function Diphosphomevalonate decarboxylase activity IBA
GO:0004163 Function Diphosphomevalonate decarboxylase activity IDA 11792727, 14680974
GO:0004163 Function Diphosphomevalonate decarboxylase activity IEA
GO:0005524 Function ATP binding IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
603236 7529 ENSG00000167508
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
P53602
Protein name Diphosphomevalonate decarboxylase (EC 4.1.1.33) (Mevalonate (diphospho)decarboxylase) (MDDase) (Mevalonate pyrophosphate decarboxylase)
Protein function Catalyzes the ATP dependent decarboxylation of (R)-5-diphosphomevalonate to form isopentenyl diphosphate (IPP). Functions in the mevalonate (MVA) pathway leading to isopentenyl diphosphate (IPP), a key precursor for the biosynthesis of isoprenoi
PDB 3D4J
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00288 GHMP_kinases_N 111 166 GHMP kinases N terminal domain Family
PF18376 MDD_C 197 382 Mevalonate 5-diphosphate decarboxylase C-terminal domain Domain
Tissue specificity TISSUE SPECIFICITY: Expressed in heart, skeletal muscle, lung, liver, brain, pancreas, kidney and placenta. {ECO:0000269|PubMed:8626466}.
Sequence
Sequence length 400
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Terpenoid backbone biosynthesis
Metabolic pathways
  Cholesterol biosynthesis
Activation of gene expression by SREBF (SREBP)
Synthesis of Dolichyl-phosphate
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
27
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Linear porokeratosis Likely pathogenic rs2142896426 RCV001849673
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
MVD-related disorder Pathogenic rs761991070 RCV004757180
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Porokeratosis 7, multiple types Pathogenic rs2142906391, rs780212718, rs761991070, rs755948940 RCV001733589
RCV001784685
RCV000239486
RCV000239520
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
Acute myeloid leukemia Benign; Likely benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Adrenocortical carcinoma, hereditary Benign; Likely benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Cervical cancer Conflicting classifications of pathogenicity; Benign; Likely benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Clear cell carcinoma of kidney Benign; Likely benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Acute intermittent porphyria Intermittent Porphyria BEFREE 28506431
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma of pancreas Pancreatic adenocarcinoma BEFREE 12553038
★☆☆☆☆
Found in Text Mining only
Adjustment Disorders Adjustment Disorders BEFREE 19605821
★☆☆☆☆
Found in Text Mining only
Anxiety Anxiety Disorder BEFREE 31368052
★☆☆☆☆
Found in Text Mining only
Anxiety Disorders Anxiety Disorder BEFREE 31368052
★☆☆☆☆
Found in Text Mining only
Breast Carcinoma Breast Carcinoma BEFREE 24595984, 24687553, 26294068
★☆☆☆☆
Found in Text Mining only
Breast Diseases Breast Diseases BEFREE 24687553
★☆☆☆☆
Found in Text Mining only
Carcinoma, Ovarian Epithelial Ovarian Epithelial carcinoma BEFREE 24236050
★☆☆☆☆
Found in Text Mining only
Chronic myeloproliferative disorder Myeloproliferative disorder BEFREE 17124067, 18480833, 20829714, 23756559
★☆☆☆☆
Found in Text Mining only
Colorectal Carcinoma Colorectal Cancer BEFREE 23239191, 29970509
★☆☆☆☆
Found in Text Mining only