Gene Gene information from NCBI Gene database.
Entrez ID 4221
Gene name Menin 1
Gene symbol MEN1
Synonyms (NCBI Gene)
MEAISCG2
Chromosome 11
Chromosome location 11q13.1
Summary This gene encodes menin, a tumor suppressor associated with a syndrome known as multiple endocrine neoplasia type 1. Menin is a scaffold protein that functions in histone modification and epigenetic gene regulation. It is thought to regulate several pathw
SNPs SNP information provided by dbSNP.
201
SNP ID Visualize variation Clinical significance Consequence
rs607969 C>G,T Benign, benign-likely-benign, conflicting-interpretations-of-pathogenicity, uncertain-significance Missense variant, coding sequence variant
rs28931612 C>A,T Pathogenic, uncertain-significance, likely-pathogenic Coding sequence variant, stop gained, missense variant
rs77461664 G>A,C,T Uncertain-significance, benign, likely-benign, conflicting-interpretations-of-pathogenicity Intron variant
rs104894256 A>C Pathogenic, likely-pathogenic Missense variant, coding sequence variant
rs104894257 C>T Pathogenic Stop gained, coding sequence variant, intron variant
miRNA miRNA information provided by mirtarbase database.
360
miRTarBase ID miRNA Experiments Reference
MIRT050813 hsa-miR-17-5p CLASH 23622248
MIRT049455 hsa-miR-92a-3p CLASH 23622248
MIRT040940 hsa-miR-18a-3p CLASH 23622248
MIRT054288 hsa-miR-24-3p Luciferase reporter assayNorthern blotqRT-PCRWestern blot 22761894
MIRT455061 hsa-miR-3141 PAR-CLIP 23592263
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
54
GO ID Ontology Definition Evidence Reference
GO:0000122 Process Negative regulation of transcription by RNA polymerase II IDA 9989505, 12837246, 22327296, 23784080
GO:0000165 Process MAPK cascade IDA 12226747
GO:0000400 Function Four-way junction DNA binding IDA 15331604
GO:0000403 Function Y-form DNA binding IBA
GO:0000403 Function Y-form DNA binding IDA 15331604
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
613733 7010 ENSG00000133895
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
O00255
Protein name Menin
Protein function Essential component of a MLL/SET1 histone methyltransferase (HMT) complex, a complex that specifically methylates 'Lys-4' of histone H3 (H3K4). Functions as a transcriptional regulator. Binds to the TERT promoter and represses telomerase express
PDB 3U84 , 3U85 , 3U86 , 3U88 , 4GPQ , 4GQ3 , 4GQ4 , 4GQ6 , 4I80 , 4OG3 , 4OG4 , 4OG5 , 4OG6 , 4OG7 , 4OG8 , 4X5Y , 4X5Z , 5DB0 , 5DB1 , 5DB2 , 5DB3 , 5DD9 , 5DDA , 5DDB , 5DDC , 5DDD , 5DDE , 5DDF , 6B41 , 6BXH , 6BXY , 6BY8 , 6E1A , 6O5I , 6OPJ , 6PKC , 6S2K , 6WNH , 7M4T , 7O9T , 7O9X , 7O9Z , 7OA9 , 7UJ4 , 8E90 , 8GPN , 8IG0 , 8VA5 , 8VA6 , 9C92 , 9C93
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF05053 Menin 1 516 Menin Family
PF05053 Menin 526 613 Menin Family
Tissue specificity TISSUE SPECIFICITY: Ubiquitous.
Sequence
Sequence length 615
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Cushing syndrome
Transcriptional misregulation in cancer
  Formation of the beta-catenin:TCF transactivating complex
SMAD2/SMAD3:SMAD4 heterotrimer regulates transcription
Deactivation of the beta-catenin transactivating complex
Regulation of Insulin-like Growth Factor (IGF) transport and uptake by Insulin-like Growth Factor Binding Proteins (IGFBPs)
RHO GTPases activate IQGAPs
Post-translational protein phosphorylation
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
49
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Adrenocortical adenoma Pathogenic rs121913035 RCV000018178
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Angiofibroma, somatic Pathogenic rs121913034, rs267607234 RCV000018174
RCV000018175
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Ependymoma Pathogenic rs1555165565 RCV000577839
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Familial hyperparathyroidism or Hypocalciuric hypercalcaemia Likely pathogenic; Pathogenic rs794728654, rs104894261 RCV006436693
RCV006436388
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
Acute myeloid leukemia Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Adrenocortical carcinoma, hereditary - ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Cholangiocarcinoma Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
CHRONIC DIARRHEA Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Abducens Nerve Palsy Abducens palsy HPO_DG
★☆☆☆☆
Found in Text Mining only
Acromegaly Acromegaly BEFREE 10077364, 11061550, 15717658, 18200440, 20454499, 21778740, 30630164, 31189769
★☆☆☆☆
Found in Text Mining only
Acromegaly Acromegaly Pubtator 20454499, 33125695, 9709921 Associate
★☆☆☆☆
Found in Text Mining only
Acth-Independent Macronodular Adrenal Hyperplasia Cushing`s Syndrome BEFREE 19509103
★☆☆☆☆
Found in Text Mining only
ACTH-Secreting Pituitary Adenoma Pituitary adenoma BEFREE 28079577
★☆☆☆☆
Found in Text Mining only
ACTH-Secreting Pituitary Adenoma Pituitary adenoma HPO_DG
★☆☆☆☆
Found in Text Mining only
Acute leukemia Leukemia BEFREE 22936661, 29738674
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma Adenocarcinoma LHGDN 18036394
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma Adenocarcinoma BEFREE 23639647, 7757292
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma of lung (disorder) Lung adenocarcinoma BEFREE 19749796, 23027861
★☆☆☆☆
Found in Text Mining only