Gene Gene information from NCBI Gene database.
Entrez ID 4214
Gene name Mitogen-activated protein kinase kinase kinase 1
Gene symbol MAP3K1
Synonyms (NCBI Gene)
MAPKKK1MEKKMEKK 1MEKK1SRXY6
Chromosome 5
Chromosome location 5q11.2
Summary The protein encoded by this gene is a serine/threonine kinase and is part of some signal transduction cascades, including the ERK and JNK kinase pathways as well as the NF-kappa-B pathway. The encoded protein is activated by autophosphorylation and requir
SNPs SNP information provided by dbSNP.
13
SNP ID Visualize variation Clinical significance Consequence
rs56160159 C>T Likely-pathogenic Non coding transcript variant, coding sequence variant, missense variant
rs143853590 G>A,C,T Likely-benign, pathogenic Missense variant, coding sequence variant, non coding transcript variant
rs387906788 T>A,C,G Likely-pathogenic, pathogenic Non coding transcript variant, coding sequence variant, missense variant
rs886041049 G>A Likely-pathogenic Coding sequence variant, non coding transcript variant, missense variant
rs1131692053 T>A Pathogenic Intron variant
miRNA miRNA information provided by mirtarbase database.
553
miRTarBase ID miRNA Experiments Reference
MIRT004142 hsa-miR-192-5p Microarray 16822819
MIRT031009 hsa-miR-21-5p Microarray 18591254
MIRT052565 hsa-let-7a-5p CLASH 23622248
MIRT047383 hsa-miR-34a-5p CLASH 23622248
MIRT046560 hsa-let-7g-5p CLASH 23622248
Transcription factors Transcription factors information provided by TRRUST V2 database.
2
Transcription factor Regulation Reference
ATF2 Unknown 9710625
JUN Unknown 9710625
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
26
GO ID Ontology Definition Evidence Reference
GO:0000165 Process MAPK cascade IEA
GO:0000166 Function Nucleotide binding IEA
GO:0004672 Function Protein kinase activity IDA 15001576
GO:0004672 Function Protein kinase activity IEA
GO:0004674 Function Protein serine/threonine kinase activity EXP 7997270, 9639556
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
600982 6848 ENSG00000095015
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q13233
Protein name Mitogen-activated protein kinase kinase kinase 1 (EC 2.7.11.25) (MAPK/ERK kinase kinase 1) (MEK kinase 1) (MEKK 1) (EC 2.3.2.27)
Protein function Component of a protein kinase signal transduction cascade (PubMed:9808624). Activates the ERK and JNK kinase pathways by phosphorylation of MAP2K1 and MAP2K4 (PubMed:9808624). May phosphorylate the MAPK8/JNK1 kinase (PubMed:17761173). Activates
PDB 6WHB
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00069 Pkinase 1243 1508 Protein kinase domain Domain
Sequence
MAAAAGNRASSSGFPGARATSPEAGGGGGALKASSAPAAAAGLLREAGSGGRERADWRRR
QLRKVRSVELDQLPEQPLFLAASPPASSTSPSPEPADAAGSGTGFQPVAVPPPHGAASRG
GAHLTESVAAPDSGASSPAAAEPGEKRAPAAEPSPAAAPAGREMENKETLKGLHKMDDRP
EERMIREKLKATCMPAWKHEWLERRNRRGPVVVKPIPVKGDGSEMNHLAAESPGEVQASA
ASPASKGRRSPSPGNSPSGRTVKSESPGVRRKRVSPVPFQSGRITPPRRAPSPDGFSPYS
PEETNRRVNKVMRARLYLLQQIGPNSFLIGGDSPDNKYRVFIGPQNCSCARGTFCIHLLF
VMLRVFQLEPSDPMLWRKTLKNFEVESLFQKYHSRRSSRIKAPSRNTIQKFVSRMSNSHT
LSSSSTSTSSSENSIKDEEEQMCPICLLGMLDEESLTVCEDGCRNKLHHHCMSIWAEECR
RNREPLICPLCRSKWRSHDFYSHELSSPVDSPSSLRAAQQQTVQQQPLAGSRRNQESNFN
LTHYGTQQIPPAYKDLAEPWIQVFGMELVGCLFSRNWNVREMALRRLSHDVSGALLLANG
ESTGNSGGSSGSSPSGGATSGSSQTSISGDVVEACCSVLSMVCADPVYKVYVAALKTLRA
MLVYTPCHSLAERIKLQRLLQPVVDTILVKCADANSRTSQLSISTLLELCKGQAGELAVG
REILKAGSIGIGGVDYVLNCILGNQTESNNWQELLGRLCLIDRLLLEFPAEFYPHIVSTD
VSQAEPVEIRYKKLLSLLTFALQSIDNSHSMVGKLSRRIYLSSARMVTTVPHVFSKLLEM
LSVSSSTHFTRMRRRLMAIADEVEIAEAIQLGVEDTLDGQQDSFLQASVPNNYLETTENS
SPECTVHLEKTGKGLCATKLSASSEDISERLASISVGPSSSTTTTTTTTEQPKPMVQTKG
RPHSQCLNSSPLSHHSQLMFPALSTPSSSTPSVPAGTATDVSKHRLQGFIPCRIPSASPQ
TQRKFSLQFHRNCPENKDSDKLSPVFTQSRPLPSSNIHRPKPSRPTPGNTSKQGDPSKNS
MTLDLNSSSKCDDSFGCSSNSSNAVIPSDETVFTPVEEKCRLDVNTELNSSIEDLLEASM
PSSDTTVTFKSEVAVLSPEKAENDDTYKDDVNHNQKCKEKMEAEEEEALAIAMAMSASQD
ALPIVPQLQVENGEDIIIIQQDTPETLPGHTKAKQPYREDTEWLKGQQIGLGAFSSCYQA
QDVGTGTLMAVKQVTYVRNTSSEQEEVVEALREEIRMMSHLNHPNIIRMLGATCEKSNYN
LFIEWMAGGSVAHLLSKYGAFKESVVINYTEQLLRGLSYLHENQIIHRDVKGANLLIDST
GQRLRIADFGAAARLASKGTGAGEFQGQLLGTIAFMAPEVLRGQQYGRSCDVWSVGCAII
EMACAKPPWNAEKHSNHLALIFKIASATTAPSIPSHLSPGLRDVALRCLELQPQDRPPSR
ELLKHPVF
RTTW
Sequence length 1512
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  MAPK signaling pathway
Ubiquitin mediated proteolysis
Tight junction
RIG-I-like receptor signaling pathway
Neurotrophin signaling pathway
GnRH signaling pathway
Growth hormone synthesis, secretion and action
Hepatitis B
Human T-cell leukemia virus 1 infection
  MyD88:MAL(TIRAP) cascade initiated on plasma membrane
FCERI mediated MAPK activation
TRAF6 mediated NF-kB activation
TRAF6 mediated induction of NFkB and MAP kinases upon TLR7/8 or 9 activation
MyD88 cascade initiated on plasma membrane
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
59
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
46,XY sex reversal 6 Likely pathogenic; Pathogenic rs886041049, rs2530964031, rs2530926325, rs1131692053, rs387906788, rs1131692186, rs1554034036, rs1579750361 RCV000258799
RCV003237407
RCV003527459
RCV000023055
RCV000023057
View all (5 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
MAP3K1-related disorder Pathogenic rs387906788 RCV003407356
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Ovarian neoplasm Pathogenic; Likely pathogenic rs1561193071, rs1561198459, rs1561199329, rs1561199493, rs1561204571 RCV000785576
RCV000785371
RCV000785381
RCV000785357
RCV000785362
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
46,XY PARTIAL GONADAL DYSGENESIS CTD
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Acute myeloid leukemia Benign; Likely benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Anophthalmia-microphthalmia syndrome Likely benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
BILIARY TRACT CANCER GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
46, XY Disorders of Sex Development 46, XY disorder of sex development BEFREE 21129722, 28504475, 30608580
★☆☆☆☆
Found in Text Mining only
46,XY complete gonadal dysgenesis 46, XY complete gonadal dysgenesis Orphanet
★☆☆☆☆
Found in Text Mining only
46,XY partial gonadal dysgenesis 46, XY partial gonadal dysgenesis ORPHANET_DG 21129722
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
46,XY partial gonadal dysgenesis 46, XY partial gonadal dysgenesis Orphanet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
46,XY SEX REVERSAL 6 46, XY Sex Reversal GENOMICS_ENGLAND_DG 12476449
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
46,XY SEX REVERSAL 6 46, XY Sex Reversal UNIPROT_DG 21129722
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
46,XY SEX REVERSAL 6 46, XY Sex Reversal CTD_human_DG
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
46,XY SEX REVERSAL 6 46, XY Sex Reversal CLINVAR_DG
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Abetalipoproteinemia Abetalipoproteinemia BEFREE 16044153
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma of pancreas Pancreatic adenocarcinoma BEFREE 19513748
★☆☆☆☆
Found in Text Mining only