Gene Gene information from NCBI Gene database.
Entrez ID 410
Gene name Arylsulfatase A
Gene symbol ARSA
Synonyms (NCBI Gene)
ASAMLD
Chromosome 22
Chromosome location 22q13.33
Summary The protein encoded by this gene hydrolyzes cerebroside sulfate to cerebroside and sulfate. Defects in this gene lead to metachromatic leucodystrophy (MLD), a progressive demyelination disease which results in a variety of neurological symptoms and ultima
SNPs SNP information provided by dbSNP.
125
SNP ID Visualize variation Clinical significance Consequence
rs6151414 C>G,T Conflicting-interpretations-of-pathogenicity Intron variant
rs6151429 T>C Benign, pathogenic, benign-likely-benign, other 3 prime UTR variant
rs28940893 G>A Pathogenic 3 prime UTR variant, coding sequence variant, missense variant
rs28940894 T>G Pathogenic Coding sequence variant, missense variant
rs28940895 G>A Pathogenic Coding sequence variant, missense variant
miRNA miRNA information provided by mirtarbase database.
424
miRTarBase ID miRNA Experiments Reference
MIRT018147 hsa-miR-335-5p Microarray 18185580
MIRT610868 hsa-miR-6808-5p HITS-CLIP 23824327
MIRT610867 hsa-miR-6893-5p HITS-CLIP 23824327
MIRT610866 hsa-miR-940 HITS-CLIP 23824327
MIRT610865 hsa-miR-3929 HITS-CLIP 23824327
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
17
GO ID Ontology Definition Evidence Reference
GO:0004065 Function Arylsulfatase activity IBA
GO:0004065 Function Arylsulfatase activity TAS 2562955
GO:0004098 Function Cerebroside-sulfatase activity IEA
GO:0005509 Function Calcium ion binding IDA 12888274
GO:0005515 Function Protein binding IPI 21516116, 25416956, 25910212, 26871637, 32296183
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
607574 713 ENSG00000100299
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
P15289
Protein name Arylsulfatase A (ASA) (EC 3.1.6.8) (Cerebroside-sulfatase) [Cleaved into: Arylsulfatase A component B; Arylsulfatase A component C]
Protein function Hydrolyzes cerebroside sulfate.
PDB 1AUK , 1E1Z , 1E2S , 1E33 , 1E3C , 1N2K , 1N2L , 2AIJ , 2AIK , 2HI8
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00884 Sulfatase 21 346 Sulfatase Family
PF14707 Sulfatase_C 368 502 Domain
Sequence
Sequence length 507
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Sphingolipid metabolism
Metabolic pathways
Lysosome
  Glycosphingolipid metabolism
The activation of arylsulfatases
Neutrophil degranulation
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
47
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Acute myeloid leukemia Pathogenic rs80338815 RCV005887233
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
ARSA-related disorder Likely pathogenic; Pathogenic rs755974448, rs80338815, rs28940893, rs74315472, rs28940894, rs2518321662, rs768028181, rs199476355, rs199476373 RCV003395277
RCV003934795
RCV004755702
RCV003904799
RCV004755703
View all (4 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
ARYLSULFATASE A PSEUDODEFICIENCY Pathogenic rs74315464, rs148092995, rs74315482 RCV000003213
RCV000003225
RCV000003234
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
ARYLSULFATASE A PSEUDODEFICIENCY, INTERMEDIATE Likely pathogenic; Pathogenic rs74315479 RCV000003230
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
Abnormality of the nervous system Conflicting classifications of pathogenicity ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ALZHEIMER DISEASE GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Autosomal recessive sideroblastic anemia Uncertain significance ClinVar
Disgenet
★★★☆☆
Reported in Unknown/Other Associations (≥2 sources)
CHRONIC FATIGUE SYNDROME GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
22q13.3 Deletion Syndrome 22q13.3 deletion syndrome BEFREE 18478261, 20635403
★☆☆☆☆
Found in Text Mining only
Acute Coronary Syndrome Coronary Syndrome BEFREE 29393216
★☆☆☆☆
Found in Text Mining only
Acute intermittent porphyria Intermittent Porphyria BEFREE 29948059
★☆☆☆☆
Found in Text Mining only
Acute Kidney Tubular Necrosis Renal tubular necrosis BEFREE 28133684
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma Adenocarcinoma BEFREE 30083338
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma of colon Adenocarcinoma Of Colon BEFREE 16105666
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma of pancreas Pancreatic adenocarcinoma BEFREE 31768832
★☆☆☆☆
Found in Text Mining only
Adenoma Adenoma BEFREE 27752813
★☆☆☆☆
Found in Text Mining only
Agenesis of corpus callosum Agenesis Of Corpus Callosum BEFREE 31792903
★☆☆☆☆
Found in Text Mining only
Alzheimer Disease Alzheimer disease Pubtator 29486463 Associate
★★☆☆☆
Found in Text Mining + Unknown/Other Associations