Gene Gene information from NCBI Gene database.
Entrez ID 3984
Gene name LIM domain kinase 1
Gene symbol LIMK1
Synonyms (NCBI Gene)
LIMKLIMK-1
Chromosome 7
Chromosome location 7q11.23
Summary There are approximately 40 known eukaryotic LIM proteins, so named for the LIM domains they contain. LIM domains are highly conserved cysteine-rich structures containing 2 zinc fingers. Although zinc fingers usually function by binding to DNA or RNA, the
miRNA miRNA information provided by mirtarbase database.
247
miRTarBase ID miRNA Experiments Reference
MIRT020461 hsa-miR-106b-5p Microarray 17242205
MIRT042722 hsa-miR-346 CLASH 23622248
MIRT052914 hsa-miR-20a-5p Luciferase reporter assayMicroarrayqRT-PCRWestern blot 24858712
MIRT054222 hsa-miR-17-5p ImmunoblotLuciferase reporter assayqRT-PCR 23029228
MIRT054223 hsa-miR-20b-5p ImmunoblotLuciferase reporter assayqRT-PCR 23029228
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
55
GO ID Ontology Definition Evidence Reference
GO:0000166 Function Nucleotide binding IEA
GO:0001673 Component Male germ cell nucleus IEA
GO:0004672 Function Protein kinase activity IEA
GO:0004672 Function Protein kinase activity NAS 8537403
GO:0004674 Function Protein serine/threonine kinase activity IBA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
601329 6613 ENSG00000106683
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
P53667
Protein name LIM domain kinase 1 (LIMK-1) (EC 2.7.11.1)
Protein function Serine/threonine-protein kinase that plays an essential role in the regulation of actin filament dynamics. Acts downstream of several Rho family GTPase signal transduction pathways (PubMed:10436159, PubMed:11832213, PubMed:12807904, PubMed:15660
PDB 3S95 , 5HVJ , 5HVK , 5L6W , 5NXC , 6WLY , 7ATS , 7ATU , 7B8W , 8AAU
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00412 LIM 25 80 LIM domain Domain
PF00412 LIM 84 142 LIM domain Domain
PF00595 PDZ 165 255 PDZ domain Domain
PF07714 PK_Tyr_Ser-Thr 339 604 Protein tyrosine and serine/threonine kinase Domain
Tissue specificity TISSUE SPECIFICITY: Highest expression in both adult and fetal nervous system. Detected ubiquitously throughout the different regions of adult brain, with highest levels in the cerebral cortex. Expressed to a lesser extent in heart and skeletal muscle.
Sequence
Sequence length 647
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Axon guidance
Fc gamma R-mediated phagocytosis
Regulation of actin cytoskeleton
Yersinia infection
Human immunodeficiency virus 1 infection
  Regulation of actin dynamics for phagocytic cup formation
Sema3A PAK dependent Axon repulsion
RHO GTPases activate PAKs
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
18
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Undetermined early-onset epileptic encephalopathy Pathogenic rs2487140003 RCV004577926
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
Cervical cancer Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
CHRONIC OBSTRUCTIVE PULMONARY DISEASE GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
DIVERTICULAR DISEASE GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Gastric cancer Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Abnormal dermatoglyphic pattern Abnormal dermatoglyphic pattern HPO_DG
★☆☆☆☆
Found in Text Mining only
Accessory kidney Accessory Kidney HPO_DG
★☆☆☆☆
Found in Text Mining only
Acoustic Neuroma Acoustic Neuroma BEFREE 23934191
★☆☆☆☆
Found in Text Mining only
Amyloidosis Amyloidosis BEFREE 31239325
★☆☆☆☆
Found in Text Mining only
Anaplastic thyroid carcinoma Anaplastic thyroid cancer BEFREE 24858712
★☆☆☆☆
Found in Text Mining only
Aneurysm of aortic arch Aneurysm Of Aortic Arch HPO_DG
★☆☆☆☆
Found in Text Mining only
Anxiety Anxiety Disorder HPO_DG
★☆☆☆☆
Found in Text Mining only
Arnold Chiari Malformation Arnold-Chiari malformation HPO_DG
★☆☆☆☆
Found in Text Mining only
Arrhythmias Cardiac Cardiac arrhythmias Pubtator 31560829 Associate
★☆☆☆☆
Found in Text Mining only
Arthritis, Psoriatic Psoriatic Arthritis BEFREE 28791377
★☆☆☆☆
Found in Text Mining only