Gene Gene information from NCBI Gene database.
Entrez ID 3575
Gene name Interleukin 7 receptor
Gene symbol IL7R
Synonyms (NCBI Gene)
CD127CDW127IL-7R-alphaIL-7RalphaIL7RAIL7RalphaILRAIMD104lnc-IL7RsIL-7R
Chromosome 5
Chromosome location 5p13.2
Summary The protein encoded by this gene is a receptor for interleukin 7 (IL7). The function of this receptor requires the interleukin 2 receptor, gamma chain (IL2RG), which is a common gamma chain shared by the receptors of various cytokines, including interleuk
SNPs SNP information provided by dbSNP.
28
SNP ID Visualize variation Clinical significance Consequence
rs104893893 G>A Pathogenic Intron variant, coding sequence variant, stop gained
rs104893894 C>T Pathogenic Coding sequence variant, non coding transcript variant, missense variant
rs141698985 C>T Likely-pathogenic Stop gained, coding sequence variant, non coding transcript variant
rs147153824 G>A Conflicting-interpretations-of-pathogenicity Coding sequence variant, intron variant, missense variant
rs193922640 ->ATATATTTCA Likely-pathogenic Frameshift variant, coding sequence variant, non coding transcript variant
miRNA miRNA information provided by mirtarbase database.
46
miRTarBase ID miRNA Experiments Reference
MIRT029787 hsa-miR-26b-5p Microarray 19088304
MIRT723842 hsa-miR-942-3p HITS-CLIP 19536157
MIRT723841 hsa-miR-889-5p HITS-CLIP 19536157
MIRT723840 hsa-miR-1228-3p HITS-CLIP 19536157
MIRT723839 hsa-miR-6131 HITS-CLIP 19536157
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
50
GO ID Ontology Definition Evidence Reference
GO:0000018 Process Regulation of DNA recombination TAS 9495344
GO:0000902 Process Cell morphogenesis IEA
GO:0001782 Process B cell homeostasis IEA
GO:0001913 Process T cell mediated cytotoxicity IBA
GO:0001913 Process T cell mediated cytotoxicity IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
146661 6024 ENSG00000168685
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
P16871
Protein name Interleukin-7 receptor subunit alpha (IL-7 receptor subunit alpha) (IL-7R subunit alpha) (IL-7R-alpha) (IL-7RA) (CDw127) (CD antigen CD127)
Protein function Receptor for interleukin-7. Also acts as a receptor for thymic stromal lymphopoietin (TSLP).
PDB 3DI2 , 3DI3 , 3UP1 , 5J11 , 6P50 , 6P67 , 7OPB
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF18447 FN3_7 32 127 Fibronectin type III domain Domain
PF00041 fn3 130 218 Fibronectin type III domain Domain
Sequence
MTILGTTFGMVFSLLQVVSGESGYAQNGDLEDAELDDYSFSCYSQLEVNGSQHSLTCAFE
DPDVNITNLEFEICGALVEVKCLNFRKLQEIYFIETKKFLLIGKSNICVKVGEKSLTCKK
IDLTTIV
KPEAPFDLSVVYREGANDFVVTFNTSHLQKKYVKVLMHDVAYRQEKDENKWTH
VNLSSTKLTLLQRKLQPAAMYEIKVRSIPDHYFKGFWS
EWSPSYYFRTPEINNSSGEMDP
ILLTISILSFFSVALLVILACVLWKKRIKPIVWPSLPDHKKTLEHLCKKPRKNLNVSFNP
ESFLDCQIHRVDDIQARDEVEGFLQDTFPQQLEESEKQRLGGDVQSPNCPSEDVVITPES
FGRDSSLTCLAGNVSACDAPILSSSRSLDCRESGKNGPHVYQDLLLSLGTTNSTLPPPFS
LQSGILTLNPVAQGQPILTSLGSNQEEAYVTMSSFYQNQ
Sequence length 459
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Cytokine-cytokine receptor interaction
FoxO signaling pathway
PI3K-Akt signaling pathway
JAK-STAT signaling pathway
Hematopoietic cell lineage
Pathways in cancer
Primary immunodeficiency
  Interleukin-7 signaling
Cargo recognition for clathrin-mediated endocytosis
Clathrin-mediated endocytosis
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
49
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Breast neoplasm Pathogenic rs1717980926 RCV002285231
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Histiocytic medullary reticulosis Likely pathogenic rs141698985 RCV000991308
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
IL7R-related disorder Likely pathogenic rs141698985 RCV003898007
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Immunodeficiency 104 Pathogenic; Likely pathogenic rs201559094, rs1354581284, rs1759969389, rs587778405, rs1759660930, rs1225034187, rs1759788196, rs1387689607, rs199641706, rs869312857, rs1369125529, rs200044623, rs2531575374, rs2531547862, rs202007062
View all (28 more)
RCV002032697
RCV001783479
RCV001843964
RCV000688209
RCV001941548
View all (38 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
ANKYLOSING SPONDYLITIS GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ASTHMA GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ATOPIC ASTHMA GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ATOPIC ECZEMA GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Acute Coronary Syndrome Coronary Syndrome BEFREE 22872639
★☆☆☆☆
Found in Text Mining only
Acute leukemia Leukemia BEFREE 23069254
★☆☆☆☆
Found in Text Mining only
Acute lymphoblastic leukemia with lymphomatous features Lymphoblastic Leukemia With Lymphomatous Features CLINVAR_DG 22897847, 22955920
★☆☆☆☆
Found in Text Mining only
Acute lymphocytic leukemia Lymphocytic Leukemia BEFREE 11052810, 1378163, 21536738, 22368272, 22904298, 23340138, 24787007, 27322554, 28123588
★☆☆☆☆
Found in Text Mining only
Acute monocytic leukemia Monocytic Leukemia BEFREE 23069254
★☆☆☆☆
Found in Text Mining only
Acute pancreatitis Pancreatitis BEFREE 28174597
★☆☆☆☆
Found in Text Mining only
Acute Promyelocytic Leukemia Promyelocytic Leukemia BEFREE 27049062, 28912776
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma of lung (disorder) Lung adenocarcinoma BEFREE 26582240
★☆☆☆☆
Found in Text Mining only
Adrenocortical Carcinoma Adrenocortical carcinoma Pubtator 34410225 Associate
★☆☆☆☆
Found in Text Mining only
Adult Acute Lymphocytic Leukemia Lymphocytic Leukemia BEFREE 1378163, 22368272, 23340138, 27322554, 28123588
★☆☆☆☆
Found in Text Mining only