Gene Gene information from NCBI Gene database.
Entrez ID 3547
Gene name Immunoglobulin superfamily member 1
Gene symbol IGSF1
Synonyms (NCBI Gene)
CHTEIGCD1IGDC1INHBPPGSF2p120
Chromosome X
Chromosome location Xq26.1
Summary This gene encodes a member of the immunoglobulin-like domain-containing superfamily. Proteins in this superfamily contain varying numbers of immunoglobulin-like domains and are thought to participate in the regulation of interactions between cells. Multip
SNPs SNP information provided by dbSNP.
10
SNP ID Visualize variation Clinical significance Consequence
rs397514622 G>A,C Pathogenic Genic downstream transcript variant, missense variant, coding sequence variant
rs398122919 C>T Pathogenic Genic downstream transcript variant, stop gained, intron variant, coding sequence variant
rs398122920 C>- Pathogenic Genic downstream transcript variant, frameshift variant, coding sequence variant
rs398122921 ->A Pathogenic Genic downstream transcript variant, frameshift variant, coding sequence variant
rs1293658262 G>A Likely-pathogenic Genic downstream transcript variant, coding sequence variant, stop gained
miRNA miRNA information provided by mirtarbase database.
77
miRTarBase ID miRNA Experiments Reference
MIRT051138 hsa-miR-16-5p CLASH 23622248
MIRT049172 hsa-miR-92a-3p CLASH 23622248
MIRT047519 hsa-miR-10a-5p CLASH 23622248
MIRT047415 hsa-miR-10b-5p CLASH 23622248
MIRT043576 hsa-miR-148b-3p CLASH 23622248
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
10
GO ID Ontology Definition Evidence Reference
GO:0002764 Process Immune response-regulating signaling pathway IBA
GO:0005515 Function Protein binding IPI 11266516, 12421765
GO:0005576 Component Extracellular region IEA
GO:0006355 Process Regulation of DNA-templated transcription IDA 11266516
GO:0016020 Component Membrane IBA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
300137 5948 ENSG00000147255
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q8N6C5
Protein name Immunoglobulin superfamily member 1 (IgSF1) (Immunoglobulin-like domain-containing protein 1) (Inhibin-binding protein) (InhBP) (Pituitary gland-specific factor 2) (p120)
Protein function Seems to be a coreceptor in inhibin signaling, but seems not to be a high-affinity inhibin receptor. Antagonizes activin A signaling in the presence or absence of inhibin B (By similarity). Necessary to mediate a specific antagonistic effect of
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF13895 Ig_2 37 125 Immunoglobulin domain Domain
PF13895 Ig_2 322 414 Immunoglobulin domain Domain
PF13895 Ig_2 780 868 Immunoglobulin domain Domain
PF13895 Ig_2 874 962 Immunoglobulin domain Domain
PF13895 Ig_2 970 1060 Immunoglobulin domain Domain
PF00047 ig 1070 1137 Immunoglobulin domain Domain
PF13895 Ig_2 1162 1247 Immunoglobulin domain Domain
Tissue specificity TISSUE SPECIFICITY: Highly expressed in pancreas, testis and fetal liver. Moderately expressed in heart, prostate and small intestine. Expressed at very low levels in brain, thymus, ovary, colon, fetal lung and fetal kidney. Expressed in muscle. Isoform 3
Sequence
MTLDRPGEGATMLKTFTVLLFCIRMSLGMTSIVMDPQPELWIESNYPQAPWENITLWCRS
PSRISSKFLLLKDKTQMTWIRPSHKTFQVSFLIGALTESNAGLYRCCYWKETGWSKPSKV
LELEA
PGQLPKPIFWIQAETPALPGCNVNILCHGWLQDLVFMLFKEGYAEPVDYQVPTGT
MAIFSIDNLTPEDEGVYICRTHIQMLPTLWSEPSNPLKLVVAGLYPKPTLTAHPGPIMAP
GESLNLRCQGPIYGMTFALMRVEDLEKSFYHKKTIKNEANFFFQSLKIQDTGHYLCFYYD
ASYRGSLLSDVLKIWVTDTFPKTWLLARPSAVVQMGQNVSLRCRGPVDGVGLALYKKGED
KPLQFLDATSIDDNTSFFLNNVTYSDTGIYSCHYLLTWKTSIRMPSHNTVELMV
VDKPPK
PSLSAWPSTVFKLGKAITLQCRVSHPVLEFSLEWEERETFQKFSVNGDFIISNVDGKGTG
TYSCSYRVETHPNIWSHRSEPLKLMGPAGYLTWNYVLNEAIRLSLIMQLVALLLVVLWIR
WKCRRLRIREAWLLGTAQGVTMLFIVTALLCCGLCNGVLIEETEIVMPTPKPELWAETNF
PLAPWKNLTLWCRSPSGSTKEFVLLKDGTGWIATRPASEQVRAAFPLGALTQSHTGSYHC
HSWEEMAVSEPSEALELVGTDILPKPVISASPTIRGQELQLRCKGWLAGMGFALYKEGEQ
EPVQQLGAVGREAFFTIQRMEDKDEGNYSCRTHTEKRPFKWSEPSEPLELVIKEMYPKPF
FKTWASPVVTPGARVTFNCSTPHQHMSFILYKDGSEIASSDRSWASPGASAAHFLIISVG
IGDGGNYSCRYYDFSIWSEPSDPVELVV
TEFYPKPTLLAQPGPVVFPGKSVILRCQGTFQ
GMRFALLQEGAHVPLQFRSVSGNSADFLLHTVGAEDSGNYSCIYYETTMSNRGSYLSMPL
MI
WVTDTFPKPWLFAEPSSVVPMGQNVTLWCRGPVHGVGYILHKEGEATSMQLWGSTSND
GAFPITNISGTSMGRYSCCYHPDWTSSIKIQPSNTLELLV
TGLLPKPSLLAQPGPMVAPG
ENMTLQCQGELPDSTFVLLKEGAQEPLEQQRPSGYRADFWMPAVRGEDSGIYSCVYY
LDS
TPFAASNHSDSLEIWVTDKPPKPSLSAWPSTMFKLGKDITLQCRGPLPGVEFVLEHDGEE
APQQFSEDGDFVINNVEGKGIGNYSCSYRLQAYPDIWSEPSDPLELV
GAAGPVAQECTVG
NIVRSSLIVVVVVALGVVLAIEWKKWPRLRTRGSETDGRDQTIALEECNQEGEPGTPANS
PSSTSQRISVELPVPI
Sequence length 1336
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG 
  TGF-beta signaling pathway  
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
15
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Thyroid cancer, nonmedullary, 1 Pathogenic rs777462101 RCV005930249
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
X-linked central congenital hypothyroidism with late-onset testicular enlargement Pathogenic; Likely pathogenic rs1220996970, rs1309588455, rs2522216875, rs2522246692, rs2080511514, rs1556181091, rs398122919, rs398122920, rs397514622, rs398122921, rs1603404421, rs1603404413, rs1603404297 RCV001335742
RCV001733842
RCV003146187
RCV003337926
RCV004577632
View all (8 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
CONGENITAL ABSENCE OF THYROID GLAND Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
CONGENITAL ATROPHY OF THYROID Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
CONGENITAL HYPOTHYROIDISM CTD, Disgenet
CTD, Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
CONGENITAL HYPOTHYROIDISM WITHOUT GOITER Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Acromegaly Acromegaly BEFREE 25527509
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma Adenocarcinoma BEFREE 9815576
★☆☆☆☆
Found in Text Mining only
Adenoma Adenoma BEFREE 25527509
★☆☆☆☆
Found in Text Mining only
Arteriosclerosis Arteriosclerosis BEFREE 31352174
★☆☆☆☆
Found in Text Mining only
Atherosclerosis Atherosclerosis BEFREE 31352174
★☆☆☆☆
Found in Text Mining only
Azoospermia Nonobstructive Nonobstructive azoospermia Pubtator 36017582 Associate
★☆☆☆☆
Found in Text Mining only
Breast Carcinoma Breast Carcinoma BEFREE 20550696, 20595387, 28779344, 7829252, 8443798
★☆☆☆☆
Found in Text Mining only
CAPILLARY MALFORMATION-ARTERIOVENOUS MALFORMATION (disorder) Capillary Malformation-Arteriovenous Malformation BEFREE 28530642
★☆☆☆☆
Found in Text Mining only
Carcinoma of lung Lung carcinoma BEFREE 9815576
★☆☆☆☆
Found in Text Mining only
Central hypothyroidism Central hypothyroidism BEFREE 23143598, 24108313, 25354429, 25527509, 26302767, 26840047, 27146357, 28262687, 28324000, 28686733, 31650157
★☆☆☆☆
Found in Text Mining only