Gene Gene information from NCBI Gene database.
Entrez ID 353
Gene name Adenine phosphoribosyltransferase
Gene symbol APRT
Synonyms (NCBI Gene)
AMPAPRTD
Chromosome 16
Chromosome location 16q24.3
Summary Adenine phosphoribosyltransferase belongs to the purine/pyrimidine phosphoribosyltransferase family. A conserved feature of this gene is the distribution of CpG dinucleotides. This enzyme catalyzes the formation of AMP and inorganic pyrophosphate from ade
SNPs SNP information provided by dbSNP.
8
SNP ID Visualize variation Clinical significance Consequence
rs28999113 A>G Pathogenic Intron variant, missense variant, coding sequence variant
rs104894506 T>A Pathogenic Coding sequence variant, missense variant
rs104894507 C>T Pathogenic Coding sequence variant, stop gained
rs104894508 A>G Pathogenic Coding sequence variant, missense variant
rs281860263 ->A Pathogenic Splice donor variant
miRNA miRNA information provided by mirtarbase database.
138
miRTarBase ID miRNA Experiments Reference
MIRT032354 hsa-let-7b-5p Proteomics 18668040
MIRT047618 hsa-miR-10a-5p CLASH 23622248
MIRT046502 hsa-miR-15b-5p CLASH 23622248
MIRT042963 hsa-miR-324-3p CLASH 23622248
MIRT042286 hsa-miR-484 CLASH 23622248
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
32
GO ID Ontology Definition Evidence Reference
GO:0002055 Function Adenine binding IBA
GO:0002055 Function Adenine binding IEA
GO:0003999 Function Adenine phosphoribosyltransferase activity IBA
GO:0003999 Function Adenine phosphoribosyltransferase activity IDA 15196008
GO:0003999 Function Adenine phosphoribosyltransferase activity IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
102600 626 ENSG00000198931
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
P07741
Protein name Adenine phosphoribosyltransferase (APRT) (EC 2.4.2.7)
Protein function Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
PDB 1ORE , 1ZN7 , 1ZN8 , 1ZN9 , 4X44 , 4X45 , 6FCH , 6FCI , 6FCL , 6FD4 , 6FD5 , 6FD6 , 6HGP , 6HGQ , 6HGR , 6HGS
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00156 Pribosyltran 28 174 Phosphoribosyl transferase domain Domain
Sequence
Sequence length 180
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Purine metabolism
Metabolic pathways
Nucleotide metabolism
  Neutrophil degranulation
Purine salvage
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
14
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Adenine phosphoribosyltransferase deficiency Likely pathogenic; Pathogenic rs1244097151, rs918734933, rs121912681, rs281860263, rs28999113, rs104894506, rs104894507, rs281860265, rs104894508, rs2508234634, rs387906584, rs281860266, rs1909032484, rs758634272, rs1165408563
View all (42 more)
RCV001785957
RCV005624649
RCV000019956
RCV000033907
RCV000033908
View all (53 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
APRT deficiency, Japanese type Pathogenic rs28999113 RCV000019958
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
2,8-DIHYDROXYADENINE UROLITHIASIS Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
APRT-related disorder Likely benign; Benign; Conflicting classifications of pathogenicity ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
BREAST NEOPLASMS CTD
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
CARCINOMA, RENAL CELL CTD
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
2,8-Dihydroxyadenine Urolithiasis 2,8-Dihydroxyadenine Urolithiasis BEFREE 10479485, 11243733, 15196008, 15571218, 2227934, 2227951, 2418331, 3767554, 3876264, 8455250, 9521589
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
2,8-Dihydroxyadenine Urolithiasis 2,8-Dihydroxyadenine Urolithiasis ORPHANET_DG 22700886
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
2,8-Dihydroxyadenine Urolithiasis 2,8-Dihydroxyadenine Urolithiasis CTD_human_DG
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Acrodysostosis Acrodysostosis BEFREE 23033274, 25064455
★☆☆☆☆
Found in Text Mining only
Acute lymphocytic leukemia Lymphocytic Leukemia BEFREE 21493871
★☆☆☆☆
Found in Text Mining only
Acute Promyelocytic Leukemia Promyelocytic Leukemia BEFREE 23449452, 2834348
★☆☆☆☆
Found in Text Mining only
Adenine phosphoribosyltransferase deficiency Adenine Phosphoribosyltransferase Deficiency CLINVAR_DG 11243733, 1353080
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Adenine phosphoribosyltransferase deficiency Adenine Phosphoribosyltransferase Deficiency UNIPROT_DG 11243733, 1353080, 15571218, 1746557, 21635362, 3343350, 3680503, 7915931
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Adenine phosphoribosyltransferase deficiency Adenine Phosphoribosyltransferase Deficiency GENOMICS_ENGLAND_DG 1353080, 22212387, 27604308
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Adenine phosphoribosyltransferase deficiency Adenine Phosphoribosyltransferase Deficiency BEFREE 15571218, 17126311, 20101413, 2227934, 22700886, 2418331, 3193517, 8455250, 9067427, 9255672
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)