Gene Gene information from NCBI Gene database.
Entrez ID 343035
Gene name RD3 regulator of GUCY2D
Gene symbol RD3
Synonyms (NCBI Gene)
C1orf36LCA12
Chromosome 1
Chromosome location 1q32.3
Summary This gene encodes a retinal protein that is associated with promyelocytic leukemia-gene product (PML) bodies in the nucleus. Mutations in this gene cause Leber congenital amaurosis type 12, a disease that results in retinal degeneration. Alternative splic
SNPs SNP information provided by dbSNP.
6
SNP ID Visualize variation Clinical significance Consequence
rs146420268 G>A,T Conflicting-interpretations-of-pathogenicity Synonymous variant, coding sequence variant
rs386834260 C>A,T Pathogenic Splice donor variant
rs762631020 G>A,T Pathogenic Stop gained, synonymous variant, coding sequence variant
rs786205148 G>A Pathogenic Coding sequence variant, stop gained
rs786205149 TC>- Pathogenic Coding sequence variant, frameshift variant
miRNA miRNA information provided by mirtarbase database.
198
miRTarBase ID miRNA Experiments Reference
MIRT710191 hsa-miR-329-5p HITS-CLIP 19536157
MIRT710190 hsa-miR-6847-5p HITS-CLIP 19536157
MIRT710189 hsa-miR-4257 HITS-CLIP 19536157
MIRT710188 hsa-miR-202-5p HITS-CLIP 19536157
MIRT710187 hsa-miR-3692-3p HITS-CLIP 19536157
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
22
GO ID Ontology Definition Evidence Reference
GO:0001750 Component Photoreceptor outer segment IEA
GO:0001750 Component Photoreceptor outer segment ISS
GO:0001917 Component Photoreceptor inner segment IEA
GO:0001917 Component Photoreceptor inner segment ISS
GO:0005515 Function Protein binding IPI 21078983, 25416956, 29515371, 31515488, 32296183
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
180040 19689 ENSG00000198570
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q7Z3Z2
Protein name Protein RD3 (Retinal degeneration protein 3)
Protein function Plays a critical role in the regulation of enzymes involved in nucleotide cycle in photoreceptors (PubMed:21078983, PubMed:21928830, PubMed:27471269, PubMed:29515371, PubMed:30559291). Inhibits the basal catalytic activity and the GCAP-stimulate
PDB 6DRF
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF14473 RD3 5 133 RD3 protein Family
Tissue specificity TISSUE SPECIFICITY: Expressed in retina (PubMed:12914764). Widely expressed (at protein level) (PubMed:29030614). In the retina the strongest immunoreactivity is detected in the inner half of the cytoplasmic portion of the photoreceptor layer, where rods
Sequence
Sequence length 195
Interactions View interactions
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
18
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Abnormality of the eye Pathogenic rs786205148 RCV001814086
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Leber congenital amaurosis Pathogenic rs762631020 RCV005417984
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Leber congenital amaurosis 12 Pathogenic; Likely pathogenic rs386834260, rs761112550, rs762631020, rs786205148, rs786205149, rs786205150, rs2464555363, rs1410405989 RCV001886727
RCV001958711
RCV000170305
RCV000170306
RCV000170307
View all (4 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
RD3-related disorder Pathogenic rs786205148 RCV003895172
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
ASTHMA GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
CHRONIC KIDNEY DISEASE GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Familial pancreatic carcinoma Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
HYPERTENSION GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Amaurosis congenita of Leber, type 1 Leber congenital amaurosis BEFREE 23308101, 25477517
★☆☆☆☆
Found in Text Mining only
Cataract Cataract HPO_DG
★☆☆☆☆
Found in Text Mining only
Ciliopathies Ciliopathies GENOMICS_ENGLAND_DG
★☆☆☆☆
Found in Text Mining only
Congenital blindness Congenital blindness BEFREE 30559291
★☆☆☆☆
Found in Text Mining only
Congenital blindness Congenital blindness HPO_DG
★☆☆☆☆
Found in Text Mining only
Congenital cerebral hernia Congenital Cerebral Hernia HPO_DG
★☆☆☆☆
Found in Text Mining only
Disorder of eye Disorder Of Eye GENOMICS_ENGLAND_DG
★☆☆☆☆
Found in Text Mining only
Global developmental delay Developmental Delay HPO_DG
★☆☆☆☆
Found in Text Mining only
Hemiplegia/hemiparesis Hemiplegia/hemiparesis HPO_DG
★☆☆☆☆
Found in Text Mining only
Intellectual Disability Mental retardation HPO_DG
★☆☆☆☆
Found in Text Mining only