Gene Gene information from NCBI Gene database.
Entrez ID 324
Gene name APC regulator of Wnt signaling pathway
Gene symbol APC
Synonyms (NCBI Gene)
BTPS2DESMDDP2DP2.5DP3GSPPP1R46
Chromosome 5
Chromosome location 5q22.2
Summary This gene encodes a tumor suppressor protein that acts as an antagonist of the Wnt signaling pathway. It is also involved in other processes including cell migration and adhesion, transcriptional activation, and apoptosis. Defects in this gene cause famil
SNPs SNP information provided by dbSNP.
958
SNP ID Visualize variation Clinical significance Consequence
rs1801155 T>A Pathogenic-likely-pathogenic, conflicting-interpretations-of-pathogenicity, uncertain-significance, risk-factor Coding sequence variant, missense variant
rs1801166 G>C Benign-likely-benign, conflicting-interpretations-of-pathogenicity, likely-benign Coding sequence variant, missense variant
rs2229992 T>A,C,G Other, pathogenic, benign Coding sequence variant, synonymous variant, stop gained
rs3797704 A>C,G Benign-likely-benign, conflicting-interpretations-of-pathogenicity, likely-benign Coding sequence variant, synonymous variant, intron variant
rs28933379 G>A Pathogenic Coding sequence variant, missense variant
miRNA miRNA information provided by mirtarbase database.
193
miRTarBase ID miRNA Experiments Reference
MIRT001941 hsa-miR-135a-5p Luciferase reporter assayqRT-PCR 18632633
MIRT001941 hsa-miR-135a-5p Luciferase reporter assayqRT-PCR 18632633
MIRT001940 hsa-miR-135b-5p Luciferase reporter assayqRT-PCR 18632633
MIRT001940 hsa-miR-135b-5p Luciferase reporter assayqRT-PCR 18632633
MIRT001207 hsa-miR-155-5p Luciferase reporter assayWestern blot 19136465
Transcription factors Transcription factors information provided by TRRUST V2 database.
7
Transcription factor Regulation Reference
CDX2 Activation 23393221
CDX2 Unknown 24501326
CEBPZ Activation 15087381
EZH2 Repression 22907428
USF1 Activation 11241666
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
102
GO ID Ontology Definition Evidence Reference
GO:0000281 Process Mitotic cytokinesis IMP 17570218
GO:0000776 Component Kinetochore IDA 11283619
GO:0001708 Process Cell fate specification IBA
GO:0003170 Process Heart valve development ISS
GO:0003203 Process Endocardial cushion morphogenesis ISS
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
611731 583 ENSG00000134982
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
P25054
Protein name Adenomatous polyposis coli protein (Protein APC) (Deleted in polyposis 2.5)
Protein function Tumor suppressor. Promotes rapid degradation of CTNNB1 and participates in Wnt signaling as a negative regulator. APC activity is correlated with its phosphorylation state. Activates the GEF activity of SPATA13 and ARHGEF4. Plays a role in hepat
PDB 1DEB , 1EMU , 1JPP , 1M5I , 1T08 , 1TH1 , 1V18 , 2RQU , 3AU3 , 3NMW , 3NMX , 3NMZ , 3QHE , 3RL7 , 3RL8 , 3T7U , 4G69 , 4YJE , 4YJL , 4YK6 , 5B6G , 5IZ6 , 5IZ8 , 5IZ9 , 5IZA , 5Z8H , 7F6M , 7F7O , 7XTY , 8GSJ , 8X2Q
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF16689 APC_N_CC 4 55 Coiled-coil N-terminus of APC, dimerisation domain Coiled-coil
PF11414 Suppressor_APC 127 207 Family
PF18797 APC_rep 393 466 Adenomatous polyposis coli (APC) repeat Repeat
PF00514 Arm 512 553 Armadillo/beta-catenin-like repeat Repeat
PF00514 Arm 649 689 Armadillo/beta-catenin-like repeat Repeat
PF16629 Arm_APC_u3 732 1019 Disordered
PF05972 APC_15aa 1020 1034 APC 15 residue motif Motif
PF16630 APC_u5 1036 1135 Disordered
PF05972 APC_15aa 1136 1150 APC 15 residue motif Motif
PF05972 APC_15aa 1155 1169 APC 15 residue motif Motif
PF05972 APC_15aa 1172 1186 APC 15 residue motif Motif
PF05923 APC_r 1257 1280 APC repeat Motif
PF16633 APC_u9 1282 1368 Disordered
PF05923 APC_r 1371 1393 APC repeat Motif
PF05923 APC_r 1486 1509 APC repeat Motif
PF05924 SAMP 1567 1588 SAMP Motif Motif
PF05923 APC_r 1637 1660 APC repeat Motif
PF16634 APC_u13 1662 1715 Disordered
PF05924 SAMP 1716 1737 SAMP Motif Motif
PF16635 APC_u14 1746 1839 Disordered
PF05923 APC_r 1841 1865 APC repeat Motif
PF16636 APC_u15 1867 1947 Disordered
PF05923 APC_r 1949 1972 APC repeat Motif
PF05923 APC_r 2008 2030 APC repeat Motif
PF05924 SAMP 2031 2052 SAMP Motif Motif
PF05956 APC_basic 2223 2575 APC basic domain Family
PF05937 EB1_binding 2670 2843 EB-1 Binding Domain Family
Tissue specificity TISSUE SPECIFICITY: Expressed in a variety of tissues: brain, small intestine, colon, thymus, skeletal muscle, heart, prostate, lung, spleen, ovary, testis kidney, placenta, blood and liver (PubMed:21643010, PubMed:27217144). Isoform 1A: Very strongly exp
Sequence
MAAASYDQLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQLQGSIEDEAM
ASSGQIDLLERLKELNLDSSNFPGVKLRSKMSLRSYGSREGSVSSRSGECSPVPMGSFPR
RGFVNGSRESTGYLEELEKERSLLLADLDKEEKEKDWYYAQLQNLTKRIDSLPLTENFSL
QTDMTRRQLEYEARQIRVAMEEQLGTC
QDMEKRAQRRIARIQQIEKDILRIRQLLQSQAT
EAERSSQNKHETGSHDAERQNEGQGVGEINMATSGNGQGSTTRMDHETASVLSSSSTHSA
PRRLTSHLGTKVEMVYSLLSMLGTHDKDDMSRTLLAMSSSQDSCISMRQSGCLPLLIQLL
HGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETC
WEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAM
NELGGLQAIAELLQ
VDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDL
QQVIASVLRNLSW
RADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCT
ENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENN
CLQTLLQHLKSHSLTIVSNACGTLWNLSA
RNPKDQEALWDMGAVSMLKNLIHSKHKMIAM
GSAAALRNLMANRPAKYKDANIMSPGSSLPSLHVRKQKALEAELDAQHLSETFDNIDNLS
PKASHRSKQRHKQSLYGDYVFDTNRHDDNRSDNFNTGNMTVLSPYLNTTVLPSSSSSRGS
LDSSRSEKDRSLERERGIGLGNYHPATENPGTSSKRGLQISTTAAQIAKVMEEVSAIHTS
QEDRSSGSTTELHCVTDERNALRRSSAAHTHSNTYNFTKSENSNRTCSMPYAKLEYKRSS
NDSLNSVSSSDGYGKRGQMKPSIESYSEDDESKFCSYGQYPADLAHKIHSANHMDDNDG
E
LDTPINYSLKYSDE
QLNSGRQSPSQNERWARPKHIIEDEIKQSEQRQSRNQSTTYPVYTE
STDDKHLKFQPHFGQQECVSPYRSRGANGSETNRVGSNHGINQNVSQSLCQEDDY
EDDKP
TNYSERYSEE
EQHEEEERPTNYSIKYNEEKRHVDQPIDYSLKYATDIPSSQKQSFSFSKS
SSGQSSKTEHMSSSSENTSTPSSNAKRQNQLHPSSAQSRSGQPQKAATCKVSSINQETIQ
TYCVEDTPICFSRCSSLSSL
SSAEDEIGCNQTTQEADSANTLQIAEIKEKIGTRSAEDPV
SEVPAVSQHPRTKSSRLQGSSLSSESARHKAVEFSSGAKSPSKSGAQT
PKSPPEHYVQET
PLMFSRCTSVSSL
DSFESRSIASSVQSEPCSGMVSGIISPSDLPDSPGQTMPPSRSKTPP
PPPQTAQTKREVPKNKAPTAEKRESGPKQAAVNAAVQRVQVLPDADTLLHFATESTPDGF
SCSSSLSAL
SLDEPFIQKDVELRIMPPVQENDNGNETESEQPKESNENQEKEAEKTIDSE
KDLLDDSDDDDIEILEECIISAMPTKSSRKAKKPAQTASKLPPPVARKPSQLPVYKLLPS
QNRLQPQKHVSFTPGDDMPRVYCVEGTPINFSTATSLSDLTIESPPNELAAGEGVRGGAQ
SGEFEKRDTIPTEGRSTDEAQGGKTSSVTIPELDD
NKAEEGDILAECINSAMPKGKSHKP
FRVKKIMDQVQQASASSSAPNKNQLDGKKKKPTSPVKPIPQNTEYRTRVRKNADSKNNLN
AERVFSDNKDSKKQNLKNNSKVFNDKLPNNEDRVRGSFA
FDSPHHYTPIEGTPYCFSRND
SLSSL
DFDDDDVDLSREKAELRKAKENKESEAKVTSHTELTSNQQSANKTQAIAKQPINR
GQPKPILQKQSTFPQSSKDIPDRGAAT
DEKLQNFAIENTPVCFSHNSSLSSLSDIDQENN
NKENEPIKETEPPDSQGEPSKPQASGYAPKSFHVEDTPVCFSRNSSLSSLSIDSEDDLLQ
ECISSAMPKKKK
PSRLKGDNEKHSPRNMGGILGEDLTLDLKDIQRPDSEHGLSPDSENFD
WKAIQEGANSIVSSLHQAAAAACLSRQASSDSDSILSLKSGISLGSPFHLTPDQEEKPFT
SNKGPRILKPGEKSTLETKKIESESKGIKGGKKVYKSLITGKVRSNSEISGQMKQPLQAN
MPSISRGRTMIHIPGVRNSSSSTSPVSKKGPPLKTPASKSPSEGQTATTSPRGAKPSVKS
ELSPVARQTSQIGGSSKAPSRSGSRDSTPSRPAQQPLSRPIQSPGRNSISPGRNGISPPN
KLSQLPRTSSPSTASTKSSGSGKMSYTSPGRQMSQQNLTKQTGLSKNASSIPRSESASKG
LNQMNNGNGANKKVELSRMSSTKSSGSESDRSERPVLVRQSTFIKEAPSPTLRRKLEESA
SFESLSPSSRPASPTRSQAQTPVLSPSLPDMSLSTHSSVQAGGWRKLPPNLSPTIEYNDG
RPAKRHDIARSHSESPSRLPINRSGTWKREHSKHSSSLPRVSTWRRTGSSSSILS
ASSES
SEKAKSEDEKHVNSISGTKQSKENQVSAKGTWRKIKENEFSPTNSTSQTVSSGATNGAES
KTLIYQMAPAVSKTEDVWVRIEDCPINNPRSGRSPTGNTPPVIDSVSEKANPNIKDSKDN
QAKQNVGNGSVPMRTVGLENRLNSFIQVDAPDQKGTEIKPGQNNPVPVSETNESSIVERT
PFSSSSSSKHSSPSGTVAARVTPFNYNPSPRKSSADSTSARPSQIPTPVNNNTKKRDSKT
DSTESSGTQSPKRHSGSYLVTSV
Sequence length 2843
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Wnt signaling pathway
Hippo signaling pathway
Signaling pathways regulating pluripotency of stem cells
Regulation of actin cytoskeleton
Cushing syndrome
Alzheimer disease
Pathways of neurodegeneration - multiple diseases
Human papillomavirus infection
Pathways in cancer
MicroRNAs in cancer
Colorectal cancer
Endometrial cancer
Basal cell carcinoma
Breast cancer
Hepatocellular carcinoma
Gastric cancer
  Apoptotic cleavage of cellular proteins
Degradation of beta-catenin by the destruction complex
Beta-catenin phosphorylation cascade
Deactivation of the beta-catenin transactivating complex
Disassembly of the destruction complex and recruitment of AXIN to the membrane
Misspliced GSK3beta mutants stabilize beta-catenin
S33 mutants of beta-catenin aren't phosphorylated
S37 mutants of beta-catenin aren't phosphorylated
S45 mutants of beta-catenin aren't phosphorylated
T41 mutants of beta-catenin aren't phosphorylated
APC truncation mutants are not K63 polyubiquitinated
APC truncation mutants have impaired AXIN binding
AXIN missense mutants destabilize the destruction complex
Truncations of AMER1 destabilize the destruction complex
Ovarian tumor domain proteases
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
128
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Adenomatous colonic polyposis Pathogenic rs121913224, rs1057518901 RCV000626570
RCV000415316
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
ADENOMATOUS POLYPOSIS COLI WITH CONGENITAL CHOLESTEATOMA Pathogenic rs121913224 RCV000000858
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
APC associated polyposis Pathogenic rs62619935 RCV006436434
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
APC-Associated Polyposis Disorders Pathogenic rs137854580, rs121913332, rs1554080106, rs1554074772 RCV003483421
RCV001824661
RCV005420208
RCV003330781
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
Acute myeloid leukemia Conflicting classifications of pathogenicity ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ANEMIA, MACROCYTIC CTD, Disgenet
CTD, Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Attenuated familial adenomatous polyposis Uncertain significance; Conflicting classifications of pathogenicity ClinVar
Orphanet
★★★☆☆
Reported in Unknown/Other Associations (≥2 sources)
AUTISM SPECTRUM DISORDER CTD
★★☆☆☆
Found in Text Mining + Unknown/Other Associations