Gene Gene information from NCBI Gene database.
Entrez ID 3033
Gene name Hydroxyacyl-CoA dehydrogenase
Gene symbol HADH
Synonyms (NCBI Gene)
HADHADH1HADHSCHCDHHHF4MSCHADSCHAD
Chromosome 4
Chromosome location 4q25
Summary This gene is a member of the 3-hydroxyacyl-CoA dehydrogenase gene family. The encoded protein functions in the mitochondrial matrix to catalyze the oxidation of straight-chain 3-hydroxyacyl-CoAs as part of the beta-oxidation pathway. Its enzymatic activit
SNPs SNP information provided by dbSNP.
12
SNP ID Visualize variation Clinical significance Consequence
rs61735992 T>G Uncertain-significance, conflicting-interpretations-of-pathogenicity Missense variant, coding sequence variant, non coding transcript variant
rs76476980 G>A Uncertain-significance, conflicting-interpretations-of-pathogenicity Missense variant, non coding transcript variant, coding sequence variant
rs137853102 C>A,T Pathogenic Missense variant, coding sequence variant, synonymous variant, non coding transcript variant
rs137853103 C>T Pathogenic Missense variant, coding sequence variant, non coding transcript variant
rs140413151 C>A,T Uncertain-significance, conflicting-interpretations-of-pathogenicity Missense variant, non coding transcript variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
146
miRTarBase ID miRNA Experiments Reference
MIRT004893 hsa-miR-124-3p Microarray 15685193
MIRT004893 hsa-miR-124-3p Microarray 15685193
MIRT004893 hsa-miR-124-3p Microarray 18668037
MIRT023932 hsa-miR-1-3p Proteomics 18668040
MIRT023932 hsa-miR-1-3p Proteomics;Microarray 18668037
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
35
GO ID Ontology Definition Evidence Reference
GO:0003857 Function (3S)-3-hydroxyacyl-CoA dehydrogenase (NAD+) activity IBA
GO:0003857 Function (3S)-3-hydroxyacyl-CoA dehydrogenase (NAD+) activity IDA 11489939
GO:0003857 Function (3S)-3-hydroxyacyl-CoA dehydrogenase (NAD+) activity IEA
GO:0003857 Function (3S)-3-hydroxyacyl-CoA dehydrogenase (NAD+) activity TAS 8687463
GO:0005654 Component Nucleoplasm IDA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
601609 4799 ENSG00000138796
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q16836
Protein name Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial (HCDH) (EC 1.1.1.35) (Medium and short-chain L-3-hydroxyacyl-coenzyme A dehydrogenase) (Short-chain 3-hydroxyacyl-CoA dehydrogenase)
Protein function Mitochondrial fatty acid beta-oxidation enzyme that catalyzes the third step of the beta-oxidation cycle for medium and short-chain 3-hydroxy fatty acyl-CoAs (C4 to C10) (PubMed:10231530, PubMed:11489939, PubMed:16725361). Plays a role in the co
PDB 1F0Y , 1F12 , 1F14 , 1F17 , 1IL0 , 1LSJ , 1LSO , 1M75 , 1M76 , 2HDH , 3HAD , 3RQS
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF02737 3HCDH_N 29 214 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Domain
PF00725 3HCDH 216 313 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain Domain
Tissue specificity TISSUE SPECIFICITY: Expressed in liver, kidney, pancreas, heart and skeletal muscle. {ECO:0000269|PubMed:8687463}.
Sequence
Sequence length 314
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Fatty acid elongation
Fatty acid degradation
Valine, leucine and isoleucine degradation
Lysine degradation
Tryptophan metabolism
Butanoate metabolism
Metabolic pathways
Fatty acid metabolism
  Beta oxidation of lauroyl-CoA to decanoyl-CoA-CoA
Beta oxidation of decanoyl-CoA to octanoyl-CoA-CoA
Beta oxidation of octanoyl-CoA to hexanoyl-CoA
Beta oxidation of hexanoyl-CoA to butanoyl-CoA
Beta oxidation of butanoyl-CoA to acetyl-CoA
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
21
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Deficiency of 3-hydroxyacyl-CoA dehydrogenase Likely pathogenic; Pathogenic rs2126234552, rs1402140155, rs2477199629, rs138521550, rs2477237481, rs2477138010, rs111951959, rs1736114396, rs1735964758, rs2477238123, rs2477217032, rs1239277010, rs2477270617, rs2477217602, rs2477137510
View all (7 more)
RCV002249070
RCV003619821
RCV003159274
RCV003468307
RCV003468308
View all (18 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Familial hyperinsulinism Likely pathogenic rs779135938 RCV006262349
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Hyperinsulinemic hypoglycemia Likely pathogenic; Pathogenic rs779135938, rs1398546361 RCV003221358
RCV003221307
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Hyperinsulinemic hypoglycemia, familial, 4 Likely pathogenic; Pathogenic rs2477237537, rs137853103, rs2126234459, rs138521550, rs375717077, rs786200932, rs779135938, rs1398546361, rs745727504 RCV002471463
RCV000008484
RCV000008485
RCV005036809
RCV000032678
View all (4 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
3-HYDROXYACYL-COA DEHYDROGENASE DEFICIENCY GWAS catalog, GenCC
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Abnormal brain morphology Conflicting classifications of pathogenicity ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Chronic lymphocytic leukemia/small lymphocytic lymphoma Benign; Likely benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Clear cell carcinoma of kidney Benign; Likely benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
3-Hydroxyacyl-CoA Dehydrogenase Deficiency 3-hydroxyacyl-CoA Dehydrogenase Deficiency CLINGEN_DG 11489939, 15870679, 21990309, 22579592, 23273570, 23430856
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
3-Hydroxyacyl-CoA Dehydrogenase Deficiency 3-hydroxyacyl-CoA Dehydrogenase Deficiency GENOMICS_ENGLAND_DG 27181376
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
3-Hydroxyacyl-CoA Dehydrogenase Deficiency 3-hydroxyacyl-CoA Dehydrogenase Deficiency UNIPROT_DG
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
3-Hydroxyacyl-CoA Dehydrogenase Deficiency 3-hydroxyacyl-CoA Dehydrogenase Deficiency ORPHANET_DG
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
3-Hydroxyacyl-CoA Dehydrogenase Deficiency 3-hydroxyacyl-CoA Dehydrogenase Deficiency CTD_human_DG
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
3-Hydroxyacyl-CoA Dehydrogenase Deficiency 3-hydroxyacyl-CoA Dehydrogenase Deficiency CLINVAR_DG
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Adrenoleukodystrophy Adrenoleukodystrophy BEFREE 11356171
★☆☆☆☆
Found in Text Mining only
Carcinoma of larynx Laryngeal carcinoma BEFREE 28582492
★☆☆☆☆
Found in Text Mining only
Carcinoma Renal Cell Renal cell carcinoma Pubtator 30793530, 37460577 Associate
★☆☆☆☆
Found in Text Mining only
Carcinoma Renal Cell Renal cell carcinoma Pubtator 34391866 Inhibit
★☆☆☆☆
Found in Text Mining only