Gene Gene information from NCBI Gene database.
Entrez ID 30008
Gene name EGF containing fibulin extracellular matrix protein 2
Gene symbol EFEMP2
Synonyms (NCBI Gene)
ARCL1BFBLN4MBP1UPH1
Chromosome 11
Chromosome location 11q13.1
Summary A large number of extracellular matrix proteins have been found to contain variations of the epidermal growth factor (EGF) domain and have been implicated in functions as diverse as blood coagulation, activation of complement and determination of cell fat
SNPs SNP information provided by dbSNP.
13
SNP ID Visualize variation Clinical significance Consequence
rs2234462 C>T Likely-benign, benign-likely-benign, conflicting-interpretations-of-pathogenicity Missense variant, coding sequence variant, non coding transcript variant
rs119489101 C>T Pathogenic Coding sequence variant, non coding transcript variant, missense variant
rs119489102 G>A Pathogenic Coding sequence variant, non coding transcript variant, missense variant
rs144320036 G>A,C Likely-benign, conflicting-interpretations-of-pathogenicity, uncertain-significance Coding sequence variant, non coding transcript variant, missense variant
rs148410446 T>C Uncertain-significance, conflicting-interpretations-of-pathogenicity Non coding transcript variant, missense variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
55
miRTarBase ID miRNA Experiments Reference
MIRT000076 hsa-miR-346 MicroarrayqRT-PCR 16822819
MIRT000076 hsa-miR-346 Western blot;Other 21611196
MIRT021872 hsa-miR-128-3p Microarray 17612493
MIRT569889 hsa-miR-4512 PAR-CLIP 20371350
MIRT569888 hsa-miR-3918 PAR-CLIP 20371350
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
42
GO ID Ontology Definition Evidence Reference
GO:0001527 Component Microfibril IEA
GO:0001527 Component Microfibril ISS
GO:0005201 Function Extracellular matrix structural constituent RCA 28327460
GO:0005201 Function Extracellular matrix structural constituent TAS 10601734
GO:0005509 Function Calcium ion binding IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
604633 3219 ENSG00000172638
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
O95967
Protein name EGF-containing fibulin-like extracellular matrix protein 2 (Fibulin-4) (FIBL-4) (Protein UPH1)
Protein function Plays a crucial role in elastic fiber formation in tissue, and in the formation of ultrastructural connections between elastic laminae and smooth muscle cells in the aorta, therefore participates in terminal differentiation and maturation of smo
PDB 2KL7
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF07645 EGF_CA 54 87 Calcium-binding EGF domain Domain
PF07645 EGF_CA 123 162 Calcium-binding EGF domain Domain
PF12662 cEGF 183 206 Complement Clr-like EGF-like Domain
PF07645 EGF_CA 283 329 Calcium-binding EGF domain Domain
Sequence
MLPCASCLPGSLLLWALLLLLLGSASPQDSEEPDSYTECTDGYEWDPDSQHCRDVNECLT
IPEACKGEMKCINHYGGYLCLPRSAAV
INDLHGEGPPPPVPPAQHPNPCPPGYEPDDQDS
CVDVDECAQALHDCRPSQDCHNLPGSYQCTCPDGYRKIGPECVDIDECRYRYCQHRCVNL
PGSFRCQCEPGFQLGPNNRSCVDVNECDMGAPCEQRCFNSYGTFLCRCHQGYELHRDGFS
CSDIDECSYSSYLCQYRCINEPGRFSCHCPQGYQLLATRLCQDIDECESGAHQCSEAQTC
VNFHGGYRCVDTNRCVEPYIQVSENRCLC
PASNPLCREQPSSIVHRYMTITSERSVPADV
FQIQATSVYPGAYNAFQIRAGNSQGDFYIRQINNVSAMLVLARPVTGPREYVLDLEMVTM
NSLMSYRASSVLRLTVFVGAYTF
Sequence length 443
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  Reactome
    Molecules associated with elastic fibres
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
31
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Cardiovascular phenotype Likely pathogenic; Pathogenic rs1859863045, rs763944898 RCV002331962
RCV002339579
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Cutis laxa Likely pathogenic rs57685603 RCV004018137
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Cutis laxa, autosomal recessive, type 1A Pathogenic; Likely pathogenic rs119489101, rs119489102, rs193302865, rs193302868, rs193302867, rs193302869, rs193302870, rs193302864, rs193302866 RCV000032268
RCV000032275
RCV000032265
RCV000032266
RCV000032269
View all (4 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Cutis laxa, autosomal recessive, type 1B Pathogenic; Likely pathogenic rs2134747667, rs119489101, rs119489102, rs193302865, rs1859902707, rs1423701653, rs2495583852, rs2495580444, rs2495573872, rs2495579185, rs1565274421, rs1267180414, rs193302868, rs193302867, rs193302869
View all (13 more)
RCV001382781
RCV000005756
RCV000005757
RCV000005758
RCV002857374
View all (23 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
AORTIC ANEURYSM Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ARTERIAL TORTUOSITY SYNDROME Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
AUTOSOMAL RECESSIVE CUTIS LAXA TYPE 1 GWAS catalog, Orphanet
GWAS catalog, Orphanet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
BASAL CELL CARCINOMA GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Alzheimer Disease Alzheimer disease Pubtator 33083483 Associate
★☆☆☆☆
Found in Text Mining only
Aneurysm Aneurysm Pubtator 20389311 Associate
★☆☆☆☆
Found in Text Mining only
Aortic Aneurysm Aortic Aneurysm GENOMICS_ENGLAND_DG 16685658, 17937443
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Aortic Aneurysm Aortic aneurysm Pubtator 20389311 Associate
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Aortic Aneurysm Aortic Aneurysm BEFREE 28508064, 30355232
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Aortic Aneurysm Aortic Aneurysm HPO_DG
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Aortic Aneurysm Thoracic Thoracic aortic aneurysm Pubtator 26017485 Associate
★☆☆☆☆
Found in Text Mining only
Aortic Dissection Aortic dissection Pubtator 33083483 Associate
★☆☆☆☆
Found in Text Mining only
Arachnodactyly Arachnodactyly BEFREE 19664000, 27339457
★☆☆☆☆
Found in Text Mining only
Arachnodactyly Arachnodactyly HPO_DG
★☆☆☆☆
Found in Text Mining only