Gene Gene information from NCBI Gene database.
Entrez ID 2992
Gene name Glycogenin 1
Gene symbol GYG1
Synonyms (NCBI Gene)
GSD15GYG
Chromosome 3
Chromosome location 3q24
Summary This gene encodes a member of the glycogenin family. Glycogenin is a glycosyltransferase that catalyzes the formation of a short glucose polymer from uridine diphosphate glucose in an autoglucosylation reaction. This reaction is followed by elongation and
SNPs SNP information provided by dbSNP.
9
SNP ID Visualize variation Clinical significance Consequence
rs143137713 G>C Pathogenic, pathogenic-likely-pathogenic Genic upstream transcript variant, missense variant, coding sequence variant
rs267606858 C>A,G,T Pathogenic, uncertain-significance Coding sequence variant, genic upstream transcript variant, missense variant
rs370652040 G>C,T Pathogenic Intron variant, genic upstream transcript variant
rs727502869 C>T Pathogenic Stop gained, coding sequence variant, synonymous variant
rs727502870 G>A Pathogenic Stop gained, intron variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
203
miRTarBase ID miRNA Experiments Reference
MIRT025494 hsa-miR-34a-5p Proteomics 21566225
MIRT025494 hsa-miR-34a-5p Proteomics 21566225
MIRT052247 hsa-let-7b-5p CLASH 23622248
MIRT049896 hsa-miR-31-5p CLASH 23622248
MIRT1038823 hsa-miR-1184 CLIP-seq
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
25
GO ID Ontology Definition Evidence Reference
GO:0005515 Function Protein binding IPI 16189514, 17055998, 25416956, 32296183, 35271311
GO:0005576 Component Extracellular region TAS
GO:0005634 Component Nucleus IEA
GO:0005737 Component Cytoplasm IBA
GO:0005737 Component Cytoplasm IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
603942 4699 ENSG00000163754
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
P46976
Protein name Glycogenin-1 (GN-1) (GN1) (EC 2.4.1.186)
Protein function Glycogenin participates in the glycogen biosynthetic process along with glycogen synthase and glycogen branching enzyme. It catalyzes the formation of a short alpha (1,4)-glucosyl chain covalently attached via a glucose 1-O-tyrosyl linkage to in
PDB 3Q4S , 3QVB , 3RMV , 3RMW , 3T7M , 3T7N , 3T7O , 3U2T , 3U2U , 3U2V , 3U2W , 3U2X , 6EQJ , 6EQL , 7OVX , 7Q0B , 7Q0S , 7Q12 , 7Q13 , 7ZBN , 8CVX , 8CVY , 8CVZ
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF01501 Glyco_transf_8 6 224 Glycosyl transferase family 8 Family
Tissue specificity TISSUE SPECIFICITY: Highly expressed in skeletal muscle and heart, with lower levels in brain, lung, kidney and pancreas. {ECO:0000269|PubMed:8602861}.
Sequence
Sequence length 350
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Starch and sucrose metabolism
Metabolic pathways
  Glycogen synthesis
Myoclonic epilepsy of Lafora
Glycogen storage disease type XV (GYG1)
Glycogen storage disease type 0 (muscle GYS1)
Glycogen storage disease type II (GAA)
Neutrophil degranulation
Glycogen breakdown (glycogenolysis)
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
21
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Acute rhabdomyolysis Likely pathogenic; Pathogenic rs143137713 RCV005865249
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Clear cell carcinoma of kidney Likely pathogenic; Pathogenic rs370652040 RCV005888297
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Familial cancer of breast Likely pathogenic; Pathogenic rs143137713 RCV005888298
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Glycogen storage disease Likely pathogenic; Pathogenic rs143137713 RCV003993828
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
Acute myeloid leukemia Likely benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ARRHYTHMIAS, CARDIAC CTD
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ATRIAL FIBRILLATION GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
CARDIAC ARRHYTHMIA Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Arrhythmias Cardiac Cardiac arrhythmias Pubtator 20357282 Associate
★☆☆☆☆
Found in Text Mining only
Cardiomyopathies Cardiomyopathy BEFREE 27718144, 31628455, 31791869
★☆☆☆☆
Found in Text Mining only
Cardiomyopathies Cardiomyopathy Pubtator 27718144, 31628455 Associate
★☆☆☆☆
Found in Text Mining only
Cardiomyopathies Cardiomyopathy HPO_DG
★☆☆☆☆
Found in Text Mining only
Cardiomyopathy Dilated Dilated cardiomyopathy Pubtator 27718144 Associate
★☆☆☆☆
Found in Text Mining only
Cardiovascular Diseases Cardiovascular disease Pubtator 38062767 Associate
★☆☆☆☆
Found in Text Mining only
Diabetes Mellitus, Non-Insulin-Dependent Diabetes Mellitus BEFREE 10334321
★☆☆☆☆
Found in Text Mining only
Disorder of skeletal muscle Disorder Of Skeletal Muscle BEFREE 31791869
★☆☆☆☆
Found in Text Mining only
Generalized glycogen storage disease of infants Glycogen Storage Disease BEFREE 24976573
★☆☆☆☆
Found in Text Mining only
Gerstmann-Straussler-Scheinker Disease Gerstmann-Straussler-Scheinker syndrome BEFREE 28453664
★☆☆☆☆
Found in Text Mining only