Gene Gene information from NCBI Gene database.
Entrez ID 28514
Gene name Delta like canonical Notch ligand 1
Gene symbol DLL1
Synonyms (NCBI Gene)
DELTA1DL1DeltaNEDBAS
Chromosome 6
Chromosome location 6q27
Summary DLL1 is a human homolog of the Notch Delta ligand and is a member of the delta/serrate/jagged family. It plays a role in mediating cell fate decisions during hematopoiesis. It may play a role in cell-to-cell communication. [provided by RefSeq, Jul 2008]
SNPs SNP information provided by dbSNP.
3
SNP ID Visualize variation Clinical significance Consequence
rs371262985 C>A,T Pathogenic Missense variant, stop gained, coding sequence variant, intron variant
rs1583151308 CT>- Pathogenic Intron variant, coding sequence variant, frameshift variant
rs1583152162 G>A Pathogenic Intron variant, coding sequence variant, stop gained
miRNA miRNA information provided by mirtarbase database.
85
miRTarBase ID miRNA Experiments Reference
MIRT001757 hsa-miR-34a-5p ReviewLuciferase reporter assay 19461653
MIRT001757 hsa-miR-34a-5p ReviewLuciferase reporter assay 19461653
MIRT004584 hsa-miR-1-3p Review 20140609
MIRT001757 hsa-miR-34a-5p Luciferase reporter assay 20144220
MIRT001757 hsa-miR-34a-5p Luciferase reporter assay 14697198
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
143
GO ID Ontology Definition Evidence Reference
GO:0001709 Process Cell fate determination NAS 11581320
GO:0001756 Process Somitogenesis IEA
GO:0001756 Process Somitogenesis ISS
GO:0001757 Process Somite specification IEA
GO:0001947 Process Heart looping IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
606582 2908 ENSG00000198719
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
O00548
Protein name Delta-like protein 1 (Drosophila Delta homolog 1) (Delta1) (H-Delta-1)
Protein function Transmembrane ligand protein of NOTCH1, NOTCH2 and NOTCH3 receptors that binds the extracellular domain (ECD) of Notch receptor in a cis and trans fashion manner (PubMed:11006133). Following transinteraction, ligand cells produce mechanical forc
PDB 4XBM
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF07657 MNNL 22 92 N terminus of Notch ligand Family
PF01414 DSL 159 221 Delta serrate ligand Domain
PF00008 EGF 285 324 EGF-like domain Domain
PF00008 EGF 332 361 EGF-like domain Domain
PF00008 EGF 370 399 EGF-like domain Domain
PF00008 EGF 409 439 EGF-like domain Domain
PF00008 EGF 447 477 EGF-like domain Domain
PF12661 hEGF 490 511 Human growth factor-like EGF Domain
Tissue specificity TISSUE SPECIFICITY: Expressed in heart and pancreas, with lower expression in brain and muscle and almost no expression in placenta, lung, liver and kidney.
Sequence
MGSRCALALAVLSALLCQVWSSGVFELKLQEFVNKKGLLGNRNCCRGGAGPPPCACRTFF
RVCLKHYQASVSPEPPCTYGSAVTPVLGVDSF
SLPDGGGADSAFSNPIRFPFGFTWPGTF
SLIIEALHTDSPDDLATENPERLISRLATQRHLTVGEEWSQDLHSSGRTDLKYSYRFVCD
EHYYGEGCSVFCRPRDDAFGHFTCGERGEKVCNPGWKGPYC
TEPICLPGCDEQHGFCDKP
GECKCRVGWQGRYCDECIRYPGCLHGTCQQPWQCNCQEGWGGLFCNQDLNYCTHHKPCKN
GATCTNTGQGSYTCSCRPGYTGAT
CELGIDECDPSPCKNGGSCTDLENSYSCTCPPGFYG
K
ICELSAMTCADGPCFNGGRCSDSPDGGYSCRCPVGYSGFNCEKKIDYCSSSPCSNGAKC
VDLGDAYLCRCQAGFSGRH
CDDNVDDCASSPCANGGTCRDGVNDFSCTCPPGYTGRNCSA
PVSRCEHAPCHNGATCHERGHRYVCECARGYGGPNCQFLLPELPPGPAVVDLTEKLEGQG
GPFPWVAVCAGVILVLMLLLGCAAVVVCVRLRLQKHRPPADPCRGETETMNNLANCQREK
DISVSIIGATQIKNTNKKADFHGDHSADKNGFKARYPAVDYNLVQDLKGDDTAVRDAHSK
RDTKCQPQGSSGEEKGTPTTLRGGEASERKRPDSGCSTSKDTKYQSVYVISEEKDECVIA
TEV
Sequence length 723
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Endocrine resistance
Notch signaling pathway
Th1 and Th2 cell differentiation
Pathways in cancer
Chemical carcinogenesis - receptor activation
Breast cancer
  Constitutive Signaling by NOTCH1 PEST Domain Mutants
Constitutive Signaling by NOTCH1 t(7;9)(NOTCH1:M1580_K2555) Translocation Mutant
Constitutive Signaling by NOTCH1 HD Domain Mutants
Constitutive Signaling by NOTCH1 HD+PEST Domain Mutants
NOTCH3 Activation and Transmission of Signal to the Nucleus
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
21
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
DLL1-related disorder Likely pathogenic rs2483358646, rs762743550 RCV003397689
RCV003967302
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Neurodevelopmental delay Pathogenic rs2114964680 RCV002274335
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Neurodevelopmental disorder with nonspecific brain abnormalities and with or without seizures Pathogenic; Likely pathogenic rs868738986, rs2114958269, rs2114966765, rs1248063937, rs2483348338, rs2483347067, rs760008381, rs2483363120, rs2483351391, rs2483362657, rs2483346002, rs2483352410, rs2483347423, rs2483345536, rs2483363365
View all (10 more)
RCV001787704
RCV001814738
RCV002221820
RCV002222286
RCV002290142
View all (21 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
Alobar holoprosencephaly Uncertain significance ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
AUTOSOMAL DOMINANT NON-SYNDROMIC INTELLECTUAL DISABILITY ClinVar, Disgenet, Orphanet
ClinVar, Disgenet, Orphanet
ClinVar, Disgenet, Orphanet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
BRAIN NEOPLASMS CTD
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
BREAST NEOPLASMS CTD
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Acute leukemia Leukemia BEFREE 8338950, 8501986
★☆☆☆☆
Found in Text Mining only
Acute lymphocytic leukemia Lymphocytic Leukemia BEFREE 11325643, 11380394, 11839375, 1328776, 1493438, 1648373, 1824678, 2174915, 2523429, 2529925, 2848865, 8118037, 8756082, 9375746
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma of lung (disorder) Lung adenocarcinoma BEFREE 27196489
★☆☆☆☆
Found in Text Mining only
Adenomatous Polyposis Coli Multiple polyposis syndrome BEFREE 25487926
★☆☆☆☆
Found in Text Mining only
Adult Acute Lymphocytic Leukemia Lymphocytic Leukemia BEFREE 11325643, 11839375, 1824678, 2523429
★☆☆☆☆
Found in Text Mining only
Agenesis of corpus callosum Agenesis Of Corpus Callosum HPO_DG
★☆☆☆☆
Found in Text Mining only
Alobar Holoprosencephaly Alobar Holoprosencephaly ORPHANET_DG
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Alobar holoprosencephaly Alobar Holoprosencephaly Orphanet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Ambiguous Genitalia Ambiguous Genitalia HPO_DG
★☆☆☆☆
Found in Text Mining only
Anemia Aplastic Aplastic anemia Pubtator 37980558 Associate
★☆☆☆☆
Found in Text Mining only