Gene Gene information from NCBI Gene database.
Entrez ID 28234
Gene name Solute carrier organic anion transporter family member 1B3
Gene symbol SLCO1B3
Synonyms (NCBI Gene)
HBLRRLST-2LST-3TM13LST3OATP-8OATP1B3OATP8SLC21A8
Chromosome 12
Chromosome location 12p12.2
Summary This gene encodes a liver-specific member of the organic anion transporter family. The encoded protein is a transmembrane receptor that mediates the sodium-independent uptake of endogenous and xenobiotic compounds and plays a critical role in bile acid an
miRNA miRNA information provided by mirtarbase database.
91
miRTarBase ID miRNA Experiments Reference
MIRT614563 hsa-miR-8485 HITS-CLIP 21572407
MIRT614562 hsa-miR-329-3p HITS-CLIP 21572407
MIRT614561 hsa-miR-362-3p HITS-CLIP 21572407
MIRT614560 hsa-miR-603 HITS-CLIP 21572407
MIRT614559 hsa-miR-4789-3p HITS-CLIP 21572407
Transcription factors Transcription factors information provided by TRRUST V2 database.
3
Transcription factor Regulation Reference
FOXA2 Unknown 16741617
HNF1A Unknown 16741617
NR1H4 Unknown 16741617
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
27
GO ID Ontology Definition Evidence Reference
GO:0004867 Function Serine-type endopeptidase inhibitor activity IEA
GO:0005886 Component Plasma membrane IDA
GO:0005886 Component Plasma membrane IEA
GO:0005886 Component Plasma membrane TAS 10779507
GO:0006805 Process Xenobiotic metabolic process TAS
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
605495 10961 ENSG00000111700
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q9NPD5
Protein name Solute carrier organic anion transporter family member 1B3 (Liver-specific organic anion transporter 2) (LST-2) (OATP1B3) (Organic anion transporter 8) (Organic anion-transporting polypeptide 8) (OATP-8) (Solute carrier family 21 member 8)
Protein function Mediates the Na(+)-independent uptake of organic anions (PubMed:10779507, PubMed:15159445, PubMed:17412826). Shows broad substrate specificity, can transport both organic anions such as bile acid taurocholate (cholyltaurine) and conjugated stero
PDB 8PG0
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF03137 OATP 29 621 Organic Anion Transporter Polypeptide (OATP) family Family
PF07648 Kazal_2 460 506 Kazal-type serine protease inhibitor domain Domain
Tissue specificity TISSUE SPECIFICITY: Highly expressed in liver, in particular at the basolateral membrane of hepatocytes near the central vein (PubMed:10779507, PubMed:15159445). Expressed in the placenta (PubMed:12409283). In testis, primarily localized to the basal memb
Sequence
Sequence length 702
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Bile secretion
Folate transport and metabolism
  Recycling of bile acids and salts
Heme degradation
Defective SLCO1B3 causes hyperbilirubinemia, Rotor type (HBLRR)
Transport of organic anions
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
15
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Rotor syndrome Likely pathogenic; Pathogenic rs201833947, rs78627909, rs373707046, rs140033394 RCV001802593
RCV001802587
RCV000023445
RCV000779095
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
SLCO1B3-related disorder Pathogenic rs78627909, rs373707046, rs140033394 RCV003968559
RCV003415733
RCV004751699
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
Cholangiocarcinoma Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
COLONIC NEOPLASMS CTD
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
COLORECTAL NEOPLASMS CTD
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Gastric cancer Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Adenocarcinoma Adenocarcinoma BEFREE 19074900, 23307416
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma of pancreas Pancreatic adenocarcinoma BEFREE 28493059
★☆☆☆☆
Found in Text Mining only
Adrenocortical Carcinoma Adrenocortical carcinoma Pubtator 32607875 Associate
★☆☆☆☆
Found in Text Mining only
Anemia Anemia BEFREE 26641474
★☆☆☆☆
Found in Text Mining only
Atrial Fibrillation Atrial Fibrillation BEFREE 28208135
★☆☆☆☆
Found in Text Mining only
Bile Duct Diseases Bile duct disease Pubtator 21615622 Associate
★☆☆☆☆
Found in Text Mining only
Bladder Neoplasm Bladder Neoplasm BEFREE 24762081
★☆☆☆☆
Found in Text Mining only
Breast Carcinoma Breast Carcinoma BEFREE 28447211
★☆☆☆☆
Found in Text Mining only
Breast Neoplasms Breast neoplasm Pubtator 17760952 Associate
★☆☆☆☆
Found in Text Mining only
Breast Neoplasms Breast neoplasm Pubtator 33436824 Inhibit
★☆☆☆☆
Found in Text Mining only