Gene Gene information from NCBI Gene database.
Entrez ID 274
Gene name Bridging integrator 1
Gene symbol BIN1
Synonyms (NCBI Gene)
AMPH2AMPHLCNM2SH3P9
Chromosome 2
Chromosome location 2q14.3
Summary This gene encodes several isoforms of a nucleocytoplasmic adaptor protein, one of which was initially identified as a MYC-interacting protein with features of a tumor suppressor. Isoforms that are expressed in the central nervous system may be involved in
SNPs SNP information provided by dbSNP.
15
SNP ID Visualize variation Clinical significance Consequence
rs61748155 C>A,G,T Benign, conflicting-interpretations-of-pathogenicity Coding sequence variant, intron variant, synonymous variant
rs121909273 C>A Pathogenic Coding sequence variant, missense variant
rs121909274 C>T Pathogenic Coding sequence variant, missense variant
rs121909275 T>A Likely-pathogenic Stop gained, coding sequence variant
rs267606681 C>T Likely-pathogenic Coding sequence variant, missense variant
miRNA miRNA information provided by mirtarbase database.
10
miRTarBase ID miRNA Experiments Reference
MIRT018686 hsa-miR-335-5p Microarray 18185580
MIRT756005 hsa-miR-200a-3p Luciferase reporter assayWestern blottingqRT-PCRImmunoprecipitaion (IP)Immunohistochemistry (IHC) 35149697
MIRT821499 hsa-miR-1254 CLIP-seq
MIRT821500 hsa-miR-1305 CLIP-seq
MIRT821501 hsa-miR-296-5p CLIP-seq
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
79
GO ID Ontology Definition Evidence Reference
GO:0000122 Process Negative regulation of transcription by RNA polymerase II IDA 10412034
GO:0002020 Function Protease binding IPI 27179792
GO:0005515 Function Protein binding IPI 10903846, 12604805, 12668730, 15992821, 16275660, 16530520, 17676042, 18647389, 18985028, 19004523, 23399914, 23917616, 24169621, 26395440, 26506308, 28755476, 31413325, 32552912, 33961781, 35271311
GO:0005543 Function Phospholipid binding IBA
GO:0005634 Component Nucleus IDA 8782822, 25051234
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
601248 1052 ENSG00000136717
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
O00499
Protein name Myc box-dependent-interacting protein 1 (Amphiphysin II) (Amphiphysin-like protein) (Box-dependent myc-interacting protein 1) (Bridging integrator 1)
Protein function Is a key player in the control of plasma membrane curvature, membrane shaping and membrane remodeling. Required in muscle cells for the formation of T-tubules, tubular invaginations of the plasma membrane that function in depolarization-contract
PDB 1MUZ , 1MV0 , 1MV3 , 2FIC , 2RMY , 2RND , 5I22
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF03114 BAR 18 268 BAR domain Domain
PF14604 SH3_9 527 590 Variant SH3 domain Domain
Tissue specificity TISSUE SPECIFICITY: Ubiquitous. Highest expression in the brain and muscle (PubMed:9182667). Expressed in oligodendrocytes (PubMed:27488240). Isoform IIA is expressed only in the brain, where it is detected in the gray matter, but not in the white matter
Sequence
MAEMGSKGVTAGKIASNVQKKLTRAQEKVLQKLGKADETKDEQFEQCVQNFNKQLTEGTR
LQKDLRTYLASVKAMHEASKKLNECLQEVYEPDWPGRDEANKIAENNDLLWMDYHQKLVD
QALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQTAKKKDEAKIAKPVSLLEK
AAPQWCQGKLQAHLVAQTNLLRNQAEEELIKAQKVFEEMNVDLQEELPSLWNSRVGFYVN
TFQSIAGLEENFHKEMSKLNQNLNDVLV
GLEKQHGSNTFTVKAQPSDNAPAKGNKSPSPP
DGSPAATPEIRVNHEPEPAGGATPGATLPKSPSQLRKGPPVPPPPKHTPSKEVKQEQILS
LFEDTFVPEISVTTPSQFEAPGPFSEQASLLDLDFDPLPPVTSPVKAPTPSGQSIPWDLW
EPTESPAGSLPSGEPSAAEGTFAVSWPSQTAEPGPAQPAEASEVAGGTQPAAGAQEPGET
AASEAASSSLPAVVVETFPATVNGTVEGGSGAGRLDLPPGFMFKVQAQHDYTATDTDELQ
LKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTE
RVP
Sequence length 593
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Endocytosis
Fc gamma R-mediated phagocytosis
  Clathrin-mediated endocytosis
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
35
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Myopathy, centronuclear, 2 Pathogenic; Likely pathogenic rs587783343, rs121909273, rs121909274, rs121909275, rs777176261, rs1249621033 RCV000145341
RCV000008795
RCV000008796
RCV000008797
RCV000754843
View all (1 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
ALZHEIMER DISEASE GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ALZHEIMER'S DISEASE NEUROPATHOLOGIC CHANGE GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ALZHEIMERS DISEASE Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
APHTHOUS ULCER GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Acute Confusional Senile Dementia Senile Dementia CTD_human_DG 21460841
★☆☆☆☆
Found in Text Mining only
Acute transient psychotic disorder Transient Psychotic Disorder GWASCAT_DG 22005930
★☆☆☆☆
Found in Text Mining only
Alzheimer Disease Alzheimer disease Pubtator 20558387, 21059989, 21220176, 21347408, 21379329, 22445811, 22482808, 22539578, 23202439, 23226438, 23360175, 23419238, 23954108, 24023061, 24205320
View all (46 more)
Associate
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Alzheimer Disease Alzheimer disease Pubtator 27346750, 36759259 Inhibit
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Alzheimer Disease, Early Onset Alzheimer disease CTD_human_DG 21460841
★☆☆☆☆
Found in Text Mining only
Alzheimer Disease, Late Onset Alzheimer disease BEFREE 21321396, 21379329, 21390209, 22722634, 23419238, 23871436, 23954108, 24582639, 24590001, 25022885, 25199842, 26101835, 26553058, 26846281, 26947052
View all (12 more)
★☆☆☆☆
Found in Text Mining only
Alzheimer Disease, Late Onset Alzheimer disease CTD_human_DG 21460841
★☆☆☆☆
Found in Text Mining only
Alzheimer`s Disease Alzheimer disease CTD_human_DG 21460841
★☆☆☆☆
Found in Text Mining only
Alzheimer`s Disease Alzheimer disease GWASCAT_DG 22005930, 29777097
★☆☆☆☆
Found in Text Mining only
Alzheimer`s Disease Alzheimer disease GWASDB_DG 22005930
★☆☆☆☆
Found in Text Mining only