Gene Gene information from NCBI Gene database.
Entrez ID 27315
Gene name Post-GPI attachment to proteins 2
Gene symbol PGAP2
Synonyms (NCBI Gene)
CWH43-NFRAG1HPMRS3MRT17MRT21
Chromosome 11
Chromosome location 11p15.4
Summary The protein encoded by this gene plays a role in the maturation of glycosylphosphatidylinositol (GPI) anchors on GPI-anchored proteins. Mutations in this gene are associated with an autosomal recessive syndrome characterized by hyperphosphatasia and intel
SNPs SNP information provided by dbSNP.
10
SNP ID Visualize variation Clinical significance Consequence
rs587776970 C>T Pathogenic Intron variant, coding sequence variant, missense variant, synonymous variant, non coding transcript variant
rs747658866 C>T Likely-pathogenic Missense variant, 3 prime UTR variant, coding sequence variant, non coding transcript variant
rs752346360 C>G,T Likely-pathogenic Coding sequence variant, non coding transcript variant, intron variant, synonymous variant, missense variant
rs773359554 C>T Pathogenic Intron variant, genic upstream transcript variant, non coding transcript variant, synonymous variant, missense variant, coding sequence variant, 5 prime UTR variant
rs774843232 G>A,C,T Pathogenic Coding sequence variant, non coding transcript variant, synonymous variant, missense variant
miRNA miRNA information provided by mirtarbase database.
168
miRTarBase ID miRNA Experiments Reference
MIRT439993 hsa-miR-218-5p HITS-CLIP 23212916
MIRT439993 hsa-miR-218-5p HITS-CLIP 23212916
MIRT1227114 hsa-miR-101 CLIP-seq
MIRT1227115 hsa-miR-1224-5p CLIP-seq
MIRT1227116 hsa-miR-1253 CLIP-seq
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
14
GO ID Ontology Definition Evidence Reference
GO:0000139 Component Golgi membrane IEA
GO:0000139 Component Golgi membrane ISS
GO:0005515 Function Protein binding IPI 25416956, 26871637, 32296183
GO:0005789 Component Endoplasmic reticulum membrane IBA
GO:0005789 Component Endoplasmic reticulum membrane ISS
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
615187 17893 ENSG00000148985
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q9UHJ9
Protein name Acyltransferase PGAP2 (EC 2.3.-.-) (FGF receptor-activating protein 1) (Post-GPI attachment to proteins factor 2)
Protein function Involved in the fatty acid remodeling steps of GPI-anchor maturation where the unsaturated acyl chain at sn-2 of inositol phosphate is replaced by a saturated stearoyl chain. May catalyze the second step of the fatty acid remodeling, by reacylat
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF10277 Frag1 18 241 Frag1/DRAM/Sfk1 family Family
Tissue specificity TISSUE SPECIFICITY: Ubiquitously expressed, with highest levels in testis and pancreas. {ECO:0000269|PubMed:10585768}.
Sequence
Sequence length 254
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG 
  Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
Metabolic pathways
 
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
12
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Cerebellar ataxia, intellectual disability, and dysequilibrium syndrome 3 Likely pathogenic; Pathogenic rs774843232 RCV005644499
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Hyperphosphatasia with intellectual disability syndrome 3 Likely pathogenic; Pathogenic rs1409597701, rs745521288, rs879255232, rs774843232, rs773359554, rs587776970, rs752346360, rs1590215915, rs1590416370, rs1590414630, rs747658866 RCV002225054
RCV003494560
RCV000043535
RCV000043536
RCV000043538
View all (6 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
Autism spectrum disorder Likely benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Cervical cancer Uncertain significance ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Congenital omphalocele Uncertain significance ClinVar
Disgenet
★★★☆☆
Reported in Unknown/Other Associations (≥2 sources)
HYPERPHOSPHATASEMIA WITH INTELLECTUAL DISABILITY Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Accessory nipple Accessory Nipple HPO_DG
★☆☆☆☆
Found in Text Mining only
Autistic behavior Autism HPO_DG
★☆☆☆☆
Found in Text Mining only
Beckwith-Wiedemann Syndrome Beckwith-Wiedemann Syndrome BEFREE 10585768
★☆☆☆☆
Found in Text Mining only
Brachycephaly Brachycephaly HPO_DG
★☆☆☆☆
Found in Text Mining only
Brain atrophy Brain atrophy CLINVAR_DG
★☆☆☆☆
Found in Text Mining only
Byzanthine arch palate High palate HPO_DG
★☆☆☆☆
Found in Text Mining only
Class III malocclusion Malocclusion HPO_DG
★☆☆☆☆
Found in Text Mining only
Clinodactyly Clinodactyly HPO_DG
★☆☆☆☆
Found in Text Mining only
Clinodactyly of fingers Clinodactyly HPO_DG
★☆☆☆☆
Found in Text Mining only
Congenital Epicanthus Congenital Epicanthus HPO_DG
★☆☆☆☆
Found in Text Mining only