Gene Gene information from NCBI Gene database.
Entrez ID 27295
Gene name PDZ and LIM domain 3
Gene symbol PDLIM3
Synonyms (NCBI Gene)
ALP
Chromosome 4
Chromosome location 4q35.1
Summary The protein encoded by this gene contains a PDZ domain and a LIM domain, indicating that it may be involved in cytoskeletal assembly. In support of this, the encoded protein has been shown to bind the spectrin-like repeats of alpha-actinin-2 and to coloca
SNPs SNP information provided by dbSNP.
2
SNP ID Visualize variation Clinical significance Consequence
rs199979457 T>A,C Conflicting-interpretations-of-pathogenicity, benign Intron variant
rs754882710 CT>- Likely-pathogenic Frameshift variant, non coding transcript variant, intron variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
177
miRTarBase ID miRNA Experiments Reference
MIRT024819 hsa-miR-215-5p Microarray 19074876
MIRT026792 hsa-miR-192-5p Microarray 19074876
MIRT677469 hsa-miR-6813-3p HITS-CLIP 23824327
MIRT677468 hsa-miR-1224-3p HITS-CLIP 23824327
MIRT677467 hsa-miR-3653-5p HITS-CLIP 23824327
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
19
GO ID Ontology Definition Evidence Reference
GO:0001725 Component Stress fiber IBA
GO:0003779 Function Actin binding IBA
GO:0005515 Function Protein binding IPI 23414517, 25416956, 25910212, 31515488
GO:0005737 Component Cytoplasm IEA
GO:0005829 Component Cytosol IDA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
605889 20767 ENSG00000154553
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q53GG5
Protein name PDZ and LIM domain protein 3 (Actinin-associated LIM protein) (Alpha-actinin-2-associated LIM protein)
Protein function May play a role in the organization of actin filament arrays within muscle cells.
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00595 PDZ 3 81 PDZ domain Domain
PF15936 DUF4749 184 272 Domain of unknown function (DUF4749) Family
PF00412 LIM 294 349 LIM domain Domain
Tissue specificity TISSUE SPECIFICITY: Isoform 1 is highly expressed in differentiated skeletal muscle. Isoform 2 is heart-specific. {ECO:0000269|PubMed:9334352}.
Sequence
Sequence length 364
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG 
  Cytoskeleton in muscle cells  
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
13
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
Cardiomyopathy Likely benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
CARDIOMYOPATHY, DILATED Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
CARDIOMYOPATHY, HYPERTROPHIC, FAMILIAL Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Cardiovascular phenotype Uncertain significance; Benign; Likely benign; Conflicting classifications of pathogenicity ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Acromegaly Acromegaly BEFREE 29895074
★☆☆☆☆
Found in Text Mining only
Adult hypophosphatasia (disorder) Hypophosphatasia BEFREE 15629439
★☆☆☆☆
Found in Text Mining only
Amyotrophic Lateral Sclerosis Amyotrophic Lateral Sclerosis BEFREE 30290707, 31690171
★☆☆☆☆
Found in Text Mining only
Ankylosing spondylitis Ankylosing Spondylitis BEFREE 29880011, 30415492
★☆☆☆☆
Found in Text Mining only
Becker Muscular Dystrophy Becker Muscular Dystrophy BEFREE 30599794
★☆☆☆☆
Found in Text Mining only
Bloom Syndrome Bloom Syndrome BEFREE 27881006
★☆☆☆☆
Found in Text Mining only
Bone Diseases Bone Disease BEFREE 30728842
★☆☆☆☆
Found in Text Mining only
Bone neoplasms Bone neoplasms BEFREE 30123093
★☆☆☆☆
Found in Text Mining only
Breast Carcinoma Breast Carcinoma BEFREE 28900285, 30706358
★☆☆☆☆
Found in Text Mining only
Carcinogenesis Carcinogenesis Pubtator 36813922 Associate
★☆☆☆☆
Found in Text Mining only