Gene Gene information from NCBI Gene database.
Entrez ID 27286
Gene name Sushi repeat containing protein X-linked 2
Gene symbol SRPX2
Synonyms (NCBI Gene)
BPPCBPSPMGXRESDXSRPUL
Chromosome X
Chromosome location Xq22.1
Summary This gene encodes a secreted protein that contains three sushi repeat motifs. The encoded protein may play a role in the development of speech and language centers in the brain. This protein may also be involved in angiogenesis. Mutations in this gene are
SNPs SNP information provided by dbSNP.
10
SNP ID Visualize variation Clinical significance Consequence
rs73636611 C>A,G Conflicting-interpretations-of-pathogenicity, benign-likely-benign Coding sequence variant, missense variant
rs121918363 A>G Conflicting-interpretations-of-pathogenicity, uncertain-significance Coding sequence variant, missense variant
rs121918364 A>C Pathogenic Coding sequence variant, missense variant
rs139377205 G>A Likely-benign, conflicting-interpretations-of-pathogenicity Coding sequence variant, synonymous variant
rs142719253 C>A,G,T Likely-benign, conflicting-interpretations-of-pathogenicity Coding sequence variant, synonymous variant, missense variant
miRNA miRNA information provided by mirtarbase database.
128
miRTarBase ID miRNA Experiments Reference
MIRT709925 hsa-miR-29a-5p HITS-CLIP 19536157
MIRT709924 hsa-miR-337-3p HITS-CLIP 19536157
MIRT709923 hsa-miR-202-5p HITS-CLIP 19536157
MIRT709922 hsa-miR-3685 HITS-CLIP 19536157
MIRT709921 hsa-miR-384 HITS-CLIP 19536157
Transcription factors Transcription factors information provided by TRRUST V2 database.
1
Transcription factor Regulation Reference
FOXP2 Unknown 20858596;21711233
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
35
GO ID Ontology Definition Evidence Reference
GO:0001525 Process Angiogenesis IEA
GO:0005102 Function Signaling receptor binding IBA
GO:0005102 Function Signaling receptor binding IEA
GO:0005102 Function Signaling receptor binding IPI 18718938
GO:0005201 Function Extracellular matrix structural constituent RCA 25037231
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
300642 30668 ENSG00000102359
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
O60687
Protein name Sushi repeat-containing protein SRPX2 (Sushi-repeat protein upregulated in leukemia)
Protein function Acts as a ligand for the urokinase plasminogen activator surface receptor. Plays a role in angiogenesis by inducing endothelial cell migration and the formation of vascular network (cords). Involved in cellular migration and adhesion. Increases
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00084 Sushi 68 117 Sushi repeat (SCR repeat) Domain
PF00084 Sushi 122 176 Sushi repeat (SCR repeat) Domain
PF02494 HYR 177 259 HYR domain Domain
PF00084 Sushi 264 319 Sushi repeat (SCR repeat) Domain
PF13778 DUF4174 334 453 Domain of unknown function (DUF4174) Family
Tissue specificity TISSUE SPECIFICITY: Expressed in neurons of the rolandic area of the brain (at protein level). Highly expressed in the brain, placenta, lung, trachea, uterus, adrenal gland, heart, ovary and placenta. Weakly expressed in the peripheral blood, brain and bo
Sequence
Sequence length 465
Interactions View interactions
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
15
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Rolandic epilepsy, intellectual disability, and speech dyspraxia, X-linked Pathogenic rs771849296 RCV001170033
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
BILATERAL PERISYLVIAN POLYMICROGYRIA Orphanet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
EPILEPSY ClinGen, Disgenet
ClinGen, Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Familial cancer of breast Uncertain significance ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Genetic developmental and epileptic encephalopathy Conflicting classifications of pathogenicity ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Adenocarcinoma Adenocarcinoma BEFREE 23115050
★☆☆☆☆
Found in Text Mining only
Alzheimer Disease Alzheimer disease Pubtator 9250173 Associate
★☆☆☆☆
Found in Text Mining only
ANOPHTHALMIA AND PULMONARY HYPOPLASIA Syndromic microphthalmia BEFREE 26191169, 31258775
★☆☆☆☆
Found in Text Mining only
Anxiety Anxiety Disorder HPO_DG
★☆☆☆☆
Found in Text Mining only
Aortic Aneurysm Abdominal Aortic aneurysm Pubtator 29191809 Associate
★☆☆☆☆
Found in Text Mining only
Apraxia of Phonation Apraxia HPO_DG
★☆☆☆☆
Found in Text Mining only
Apraxias Apraxia BEFREE 16497722
★☆☆☆☆
Found in Text Mining only
Apraxias Apraxia Pubtator 20858596 Associate
★☆☆☆☆
Found in Text Mining only
Attention deficit hyperactivity disorder Attention Deficit Hyperactivity Disorder HPO_DG
★☆☆☆☆
Found in Text Mining only
Atypical absence seizure Absence Seizure HPO_DG
★☆☆☆☆
Found in Text Mining only