Gene Details | GeDiPNet - Complete Gene Info, Disease Associations & Pathways

Gene Gene information from NCBI Gene database. Gene miRNA Gene ontology Other IDs Protein Pathways Associated diseases
Entrez ID	27072
Gene name	VPS41 subunit of HOPS complex
Gene symbol	VPS41
Synonyms (NCBI Gene)	HVPS41HVSP41SCAR29hVps41p
Chromosome	7
Chromosome location	7p14.1
Summary	Vesicle mediated protein sorting plays an important role in segregation of intracellular molecules into distinct organelles. Genetic studies in yeast have identified more than 40 vacuolar protein sorting (VPS) genes involved in vesicle transport to vacuol

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miRTarBase ID	miRNA	Experiments	Reference
MIRT052120	hsa-let-7b-5p	CLASH	23622248
MIRT048028	hsa-miR-148a-3p	CLASH	23622248
MIRT632253	hsa-miR-652-3p	HITS-CLIP	23824327
MIRT632251	hsa-miR-4714-3p	HITS-CLIP	23824327
MIRT632250	hsa-miR-6736-3p	HITS-CLIP	23824327
MIRT632249	hsa-miR-6511a-3p	HITS-CLIP	23824327
MIRT632248	hsa-miR-6511b-3p	HITS-CLIP	23824327
MIRT632247	hsa-miR-6787-3p	HITS-CLIP	23824327
MIRT632246	hsa-miR-4695-3p	HITS-CLIP	23824327
MIRT632245	hsa-miR-4634	HITS-CLIP	23824327
MIRT632244	hsa-miR-197-3p	HITS-CLIP	23824327
MIRT726124	hsa-miR-30a-5p	HITS-CLIP	22473208
MIRT726122	hsa-miR-30b-5p	HITS-CLIP	22473208
MIRT726123	hsa-miR-30c-5p	HITS-CLIP	22473208
MIRT726121	hsa-miR-30d-5p	HITS-CLIP	22473208
MIRT726120	hsa-miR-30e-5p	HITS-CLIP	22473208
MIRT632253	hsa-miR-652-3p	HITS-CLIP	23824327
MIRT632251	hsa-miR-4714-3p	HITS-CLIP	23824327
MIRT632250	hsa-miR-6736-3p	HITS-CLIP	23824327
MIRT632249	hsa-miR-6511a-3p	HITS-CLIP	23824327
MIRT632248	hsa-miR-6511b-3p	HITS-CLIP	23824327
MIRT632247	hsa-miR-6787-3p	HITS-CLIP	23824327
MIRT632246	hsa-miR-4695-3p	HITS-CLIP	23824327
MIRT632245	hsa-miR-4634	HITS-CLIP	23824327
MIRT632244	hsa-miR-197-3p	HITS-CLIP	23824327
MIRT1486876	hsa-miR-105	CLIP-seq
MIRT1486877	hsa-miR-1253	CLIP-seq
MIRT1486878	hsa-miR-145	CLIP-seq
MIRT1486879	hsa-miR-1825	CLIP-seq
MIRT1486880	hsa-miR-197	CLIP-seq
MIRT1486881	hsa-miR-199a-5p	CLIP-seq
MIRT1486882	hsa-miR-199b-5p	CLIP-seq
MIRT1486883	hsa-miR-205	CLIP-seq
MIRT1486884	hsa-miR-216b	CLIP-seq
MIRT1486885	hsa-miR-3065-5p	CLIP-seq
MIRT1486886	hsa-miR-3120-3p	CLIP-seq
MIRT1486887	hsa-miR-3140-3p	CLIP-seq
MIRT1486888	hsa-miR-3143	CLIP-seq
MIRT1486889	hsa-miR-3152-3p	CLIP-seq
MIRT1486890	hsa-miR-3174	CLIP-seq
MIRT1486891	hsa-miR-3180-5p	CLIP-seq
MIRT1486892	hsa-miR-3609	CLIP-seq
MIRT1486893	hsa-miR-3612	CLIP-seq
MIRT1486894	hsa-miR-3616-3p	CLIP-seq
MIRT1486895	hsa-miR-4272	CLIP-seq
MIRT1486896	hsa-miR-4279	CLIP-seq
MIRT1486897	hsa-miR-4302	CLIP-seq
MIRT1486898	hsa-miR-4443	CLIP-seq
MIRT1486899	hsa-miR-4504	CLIP-seq
MIRT1486900	hsa-miR-452	CLIP-seq
MIRT1486901	hsa-miR-4676-3p	CLIP-seq
MIRT1486902	hsa-miR-4704-5p	CLIP-seq
MIRT1486903	hsa-miR-4705	CLIP-seq
MIRT1486904	hsa-miR-4721	CLIP-seq
MIRT1486905	hsa-miR-4729	CLIP-seq
MIRT1486906	hsa-miR-4733-5p	CLIP-seq
MIRT1486907	hsa-miR-4762-5p	CLIP-seq
MIRT1486908	hsa-miR-4765	CLIP-seq
MIRT1486909	hsa-miR-4802-5p	CLIP-seq
MIRT1486910	hsa-miR-4803	CLIP-seq
MIRT1486911	hsa-miR-505	CLIP-seq
MIRT1486912	hsa-miR-513b	CLIP-seq
MIRT1486913	hsa-miR-543	CLIP-seq
MIRT1486914	hsa-miR-548ah	CLIP-seq
MIRT1486915	hsa-miR-548n	CLIP-seq
MIRT1486916	hsa-miR-548t	CLIP-seq
MIRT1486917	hsa-miR-610	CLIP-seq
MIRT1486918	hsa-miR-635	CLIP-seq
MIRT1486919	hsa-miR-650	CLIP-seq
MIRT1486920	hsa-miR-652	CLIP-seq
MIRT1486921	hsa-miR-944	CLIP-seq
MIRT1486922	hsa-miR-1200	CLIP-seq
MIRT1486923	hsa-miR-122	CLIP-seq
MIRT1486924	hsa-miR-1238	CLIP-seq
MIRT1486877	hsa-miR-1253	CLIP-seq
MIRT1486925	hsa-miR-130a	CLIP-seq
MIRT1486926	hsa-miR-130b	CLIP-seq
MIRT1486927	hsa-miR-136	CLIP-seq
MIRT1486928	hsa-miR-139-3p	CLIP-seq
MIRT1486878	hsa-miR-145	CLIP-seq
MIRT1486929	hsa-miR-1470	CLIP-seq
MIRT1486879	hsa-miR-1825	CLIP-seq
MIRT1486930	hsa-miR-1827	CLIP-seq
MIRT1486881	hsa-miR-199a-5p	CLIP-seq
MIRT1486882	hsa-miR-199b-5p	CLIP-seq
MIRT1486931	hsa-miR-301a	CLIP-seq
MIRT1486932	hsa-miR-301b	CLIP-seq
MIRT1486886	hsa-miR-3120-3p	CLIP-seq
MIRT1486933	hsa-miR-3127-5p	CLIP-seq
MIRT1486934	hsa-miR-3128	CLIP-seq
MIRT1486935	hsa-miR-3135b	CLIP-seq
MIRT1486889	hsa-miR-3152-3p	CLIP-seq
MIRT1486936	hsa-miR-3155	CLIP-seq
MIRT1486937	hsa-miR-3155b	CLIP-seq
MIRT1486938	hsa-miR-3156-3p	CLIP-seq
MIRT1486891	hsa-miR-3180-5p	CLIP-seq
MIRT1486939	hsa-miR-3184	CLIP-seq
MIRT1486893	hsa-miR-3612	CLIP-seq
MIRT1486894	hsa-miR-3616-3p	CLIP-seq
MIRT1486940	hsa-miR-3652	CLIP-seq
MIRT1486941	hsa-miR-3663-5p	CLIP-seq
MIRT1486942	hsa-miR-3666	CLIP-seq
MIRT1486943	hsa-miR-3929	CLIP-seq
MIRT1486944	hsa-miR-423-5p	CLIP-seq
MIRT1486945	hsa-miR-4251	CLIP-seq
MIRT1486946	hsa-miR-4268	CLIP-seq
MIRT1486947	hsa-miR-4274	CLIP-seq
MIRT1486948	hsa-miR-4280	CLIP-seq
MIRT1486949	hsa-miR-4295	CLIP-seq
MIRT1486950	hsa-miR-4301	CLIP-seq
MIRT1486897	hsa-miR-4302	CLIP-seq
MIRT1486951	hsa-miR-4324	CLIP-seq
MIRT1486952	hsa-miR-4328	CLIP-seq
MIRT1486953	hsa-miR-4419b	CLIP-seq
MIRT1486954	hsa-miR-4423-5p	CLIP-seq
MIRT1486955	hsa-miR-4430	CLIP-seq
MIRT1486898	hsa-miR-4443	CLIP-seq
MIRT1486956	hsa-miR-4448	CLIP-seq
MIRT1486957	hsa-miR-4469	CLIP-seq
MIRT1486958	hsa-miR-4470	CLIP-seq
MIRT1486959	hsa-miR-4478	CLIP-seq
MIRT1486960	hsa-miR-450b-3p	CLIP-seq
MIRT1486961	hsa-miR-4519	CLIP-seq
MIRT1486962	hsa-miR-454	CLIP-seq
MIRT1486963	hsa-miR-4649-3p	CLIP-seq
MIRT1486964	hsa-miR-4663	CLIP-seq
MIRT1486965	hsa-miR-4667-3p	CLIP-seq
MIRT1486966	hsa-miR-4691-5p	CLIP-seq
MIRT1486902	hsa-miR-4704-5p	CLIP-seq
MIRT1486967	hsa-miR-4716-5p	CLIP-seq
MIRT1486904	hsa-miR-4721	CLIP-seq
MIRT1486968	hsa-miR-4728-3p	CLIP-seq
MIRT1486969	hsa-miR-4781-3p	CLIP-seq
MIRT1486909	hsa-miR-4802-5p	CLIP-seq
MIRT1486970	hsa-miR-484	CLIP-seq
MIRT1486971	hsa-miR-515-5p	CLIP-seq
MIRT1486972	hsa-miR-544b	CLIP-seq
MIRT1486918	hsa-miR-635	CLIP-seq
MIRT1486919	hsa-miR-650	CLIP-seq
MIRT1486920	hsa-miR-652	CLIP-seq
MIRT1486973	hsa-miR-769-3p	CLIP-seq
MIRT2146525	hsa-miR-1185	CLIP-seq
MIRT1486922	hsa-miR-1200	CLIP-seq
MIRT2146526	hsa-miR-1286	CLIP-seq
MIRT1486878	hsa-miR-145	CLIP-seq
MIRT1486879	hsa-miR-1825	CLIP-seq
MIRT2146527	hsa-miR-1976	CLIP-seq
MIRT1486881	hsa-miR-199a-5p	CLIP-seq
MIRT1486882	hsa-miR-199b-5p	CLIP-seq
MIRT1486885	hsa-miR-3065-5p	CLIP-seq
MIRT1486886	hsa-miR-3120-3p	CLIP-seq
MIRT1486889	hsa-miR-3152-3p	CLIP-seq
MIRT2146528	hsa-miR-3164	CLIP-seq
MIRT1486891	hsa-miR-3180-5p	CLIP-seq
MIRT2146529	hsa-miR-3679-5p	CLIP-seq
MIRT2146530	hsa-miR-4261	CLIP-seq
MIRT1486896	hsa-miR-4279	CLIP-seq
MIRT1486897	hsa-miR-4302	CLIP-seq
MIRT1486951	hsa-miR-4324	CLIP-seq
MIRT2146531	hsa-miR-4438	CLIP-seq
MIRT2146532	hsa-miR-4530	CLIP-seq
MIRT2146533	hsa-miR-4676-5p	CLIP-seq
MIRT2146534	hsa-miR-4722-3p	CLIP-seq
MIRT2146535	hsa-miR-4722-5p	CLIP-seq
MIRT2146536	hsa-miR-5095	CLIP-seq
MIRT1486972	hsa-miR-544b	CLIP-seq
MIRT2146537	hsa-miR-575	CLIP-seq
MIRT2146538	hsa-miR-922	CLIP-seq
MIRT1486885	hsa-miR-3065-5p	CLIP-seq
MIRT1486876	hsa-miR-105	CLIP-seq
MIRT2367133	hsa-miR-1207-3p	CLIP-seq
MIRT1486923	hsa-miR-122	CLIP-seq
MIRT2367134	hsa-miR-1262	CLIP-seq
MIRT2367135	hsa-miR-1273	CLIP-seq
MIRT2367136	hsa-miR-1273f	CLIP-seq
MIRT2146526	hsa-miR-1286	CLIP-seq
MIRT1486925	hsa-miR-130a	CLIP-seq
MIRT1486926	hsa-miR-130b	CLIP-seq
MIRT2367137	hsa-miR-134	CLIP-seq
MIRT1486927	hsa-miR-136	CLIP-seq
MIRT2367138	hsa-miR-140-3p	CLIP-seq
MIRT1486878	hsa-miR-145	CLIP-seq
MIRT1486879	hsa-miR-1825	CLIP-seq
MIRT2367139	hsa-miR-190	CLIP-seq
MIRT2367140	hsa-miR-190b	CLIP-seq
MIRT2367141	hsa-miR-1912	CLIP-seq
MIRT2367142	hsa-miR-1915	CLIP-seq
MIRT1486881	hsa-miR-199a-5p	CLIP-seq
MIRT1486882	hsa-miR-199b-5p	CLIP-seq
MIRT1486931	hsa-miR-301a	CLIP-seq
MIRT1486932	hsa-miR-301b	CLIP-seq
MIRT1486885	hsa-miR-3065-5p	CLIP-seq
MIRT2367143	hsa-miR-30a	CLIP-seq
MIRT2367144	hsa-miR-30b	CLIP-seq
MIRT2367145	hsa-miR-30c	CLIP-seq
MIRT2367146	hsa-miR-30d	CLIP-seq
MIRT2367147	hsa-miR-30e	CLIP-seq
MIRT2367148	hsa-miR-3118	CLIP-seq
MIRT1486886	hsa-miR-3120-3p	CLIP-seq
MIRT1486935	hsa-miR-3135b	CLIP-seq
MIRT1486889	hsa-miR-3152-3p	CLIP-seq
MIRT1486936	hsa-miR-3155	CLIP-seq
MIRT1486937	hsa-miR-3155b	CLIP-seq
MIRT2146528	hsa-miR-3164	CLIP-seq
MIRT2367149	hsa-miR-3170	CLIP-seq
MIRT1486891	hsa-miR-3180-5p	CLIP-seq
MIRT2367150	hsa-miR-3192	CLIP-seq
MIRT2367151	hsa-miR-3545-3p	CLIP-seq
MIRT2367152	hsa-miR-3607-5p	CLIP-seq
MIRT2367153	hsa-miR-3613-3p	CLIP-seq
MIRT1486940	hsa-miR-3652	CLIP-seq
MIRT1486941	hsa-miR-3663-5p	CLIP-seq
MIRT1486942	hsa-miR-3666	CLIP-seq
MIRT2367154	hsa-miR-3913-3p	CLIP-seq
MIRT2367155	hsa-miR-3934	CLIP-seq
MIRT2367156	hsa-miR-3938	CLIP-seq
MIRT2367157	hsa-miR-409-3p	CLIP-seq
MIRT2367158	hsa-miR-4269	CLIP-seq
MIRT1486949	hsa-miR-4295	CLIP-seq
MIRT1486897	hsa-miR-4302	CLIP-seq
MIRT2367159	hsa-miR-4315	CLIP-seq
MIRT1486954	hsa-miR-4423-5p	CLIP-seq
MIRT1486955	hsa-miR-4430	CLIP-seq
MIRT2367160	hsa-miR-4436a	CLIP-seq
MIRT1486899	hsa-miR-4504	CLIP-seq
MIRT2367161	hsa-miR-4505	CLIP-seq
MIRT2367162	hsa-miR-4514	CLIP-seq
MIRT2146532	hsa-miR-4530	CLIP-seq
MIRT1486962	hsa-miR-454	CLIP-seq
MIRT2367163	hsa-miR-4645-3p	CLIP-seq
MIRT2146533	hsa-miR-4676-5p	CLIP-seq
MIRT2367164	hsa-miR-4692	CLIP-seq
MIRT2367165	hsa-miR-4696	CLIP-seq
MIRT2367166	hsa-miR-4701-3p	CLIP-seq
MIRT2367167	hsa-miR-4715-5p	CLIP-seq
MIRT1486967	hsa-miR-4716-5p	CLIP-seq
MIRT2146535	hsa-miR-4722-5p	CLIP-seq
MIRT2367168	hsa-miR-4726-3p	CLIP-seq
MIRT2367169	hsa-miR-4742-5p	CLIP-seq
MIRT1486969	hsa-miR-4781-3p	CLIP-seq
MIRT1486910	hsa-miR-4803	CLIP-seq
MIRT1486970	hsa-miR-484	CLIP-seq
MIRT2367170	hsa-miR-514	CLIP-seq
MIRT2367171	hsa-miR-514b-3p	CLIP-seq
MIRT1486971	hsa-miR-515-5p	CLIP-seq
MIRT2146537	hsa-miR-575	CLIP-seq
MIRT2367172	hsa-miR-596	CLIP-seq
MIRT2367173	hsa-miR-617	CLIP-seq
MIRT1486920	hsa-miR-652	CLIP-seq
MIRT2367174	hsa-miR-758	CLIP-seq
MIRT2367175	hsa-miR-873	CLIP-seq
MIRT2146538	hsa-miR-922	CLIP-seq
MIRT2146528	hsa-miR-3164	CLIP-seq
MIRT1486940	hsa-miR-3652	CLIP-seq
MIRT1486955	hsa-miR-4430	CLIP-seq
MIRT2146525	hsa-miR-1185	CLIP-seq
MIRT2146529	hsa-miR-3679-5p	CLIP-seq
MIRT2463296	hsa-miR-425	CLIP-seq
MIRT2463297	hsa-miR-642b	CLIP-seq
MIRT2146525	hsa-miR-1185	CLIP-seq
MIRT2367133	hsa-miR-1207-3p	CLIP-seq
MIRT1486923	hsa-miR-122	CLIP-seq
MIRT1486877	hsa-miR-1253	CLIP-seq
MIRT2660562	hsa-miR-1267	CLIP-seq
MIRT2367135	hsa-miR-1273	CLIP-seq
MIRT2146526	hsa-miR-1286	CLIP-seq
MIRT2660563	hsa-miR-1291	CLIP-seq
MIRT2660564	hsa-miR-1303	CLIP-seq
MIRT1486925	hsa-miR-130a	CLIP-seq
MIRT1486926	hsa-miR-130b	CLIP-seq
MIRT1486928	hsa-miR-139-3p	CLIP-seq
MIRT2367138	hsa-miR-140-3p	CLIP-seq
MIRT2660565	hsa-miR-15a	CLIP-seq
MIRT2660566	hsa-miR-15b	CLIP-seq
MIRT2660567	hsa-miR-16	CLIP-seq
MIRT2367139	hsa-miR-190	CLIP-seq
MIRT2367140	hsa-miR-190b	CLIP-seq
MIRT2367141	hsa-miR-1912	CLIP-seq
MIRT2660568	hsa-miR-195	CLIP-seq
MIRT1486931	hsa-miR-301a	CLIP-seq
MIRT1486932	hsa-miR-301b	CLIP-seq
MIRT1486885	hsa-miR-3065-5p	CLIP-seq
MIRT2660569	hsa-miR-3121-5p	CLIP-seq
MIRT2660570	hsa-miR-3123	CLIP-seq
MIRT2660571	hsa-miR-3125	CLIP-seq
MIRT1486935	hsa-miR-3135b	CLIP-seq
MIRT2367150	hsa-miR-3192	CLIP-seq
MIRT2660572	hsa-miR-328	CLIP-seq
MIRT2367151	hsa-miR-3545-3p	CLIP-seq
MIRT2660573	hsa-miR-3611	CLIP-seq
MIRT2367153	hsa-miR-3613-3p	CLIP-seq
MIRT1486940	hsa-miR-3652	CLIP-seq
MIRT2660574	hsa-miR-3665	CLIP-seq
MIRT1486942	hsa-miR-3666	CLIP-seq
MIRT2146529	hsa-miR-3679-5p	CLIP-seq
MIRT2660575	hsa-miR-3691-3p	CLIP-seq
MIRT2660576	hsa-miR-3916	CLIP-seq
MIRT2660577	hsa-miR-3925-5p	CLIP-seq
MIRT2660578	hsa-miR-424	CLIP-seq
MIRT2463296	hsa-miR-425	CLIP-seq
MIRT1486945	hsa-miR-4251	CLIP-seq
MIRT2146530	hsa-miR-4261	CLIP-seq
MIRT2660579	hsa-miR-4264	CLIP-seq
MIRT2367158	hsa-miR-4269	CLIP-seq
MIRT1486949	hsa-miR-4295	CLIP-seq
MIRT2367159	hsa-miR-4315	CLIP-seq
MIRT2660580	hsa-miR-4327	CLIP-seq
MIRT1486954	hsa-miR-4423-5p	CLIP-seq
MIRT1486955	hsa-miR-4430	CLIP-seq
MIRT1486960	hsa-miR-450b-3p	CLIP-seq
MIRT2367162	hsa-miR-4514	CLIP-seq
MIRT2660581	hsa-miR-4524	CLIP-seq
MIRT2146532	hsa-miR-4530	CLIP-seq
MIRT1486962	hsa-miR-454	CLIP-seq
MIRT1486964	hsa-miR-4663	CLIP-seq
MIRT2146533	hsa-miR-4676-5p	CLIP-seq
MIRT2367164	hsa-miR-4692	CLIP-seq
MIRT2367165	hsa-miR-4696	CLIP-seq
MIRT2660582	hsa-miR-4699-5p	CLIP-seq
MIRT2367167	hsa-miR-4715-5p	CLIP-seq
MIRT2146535	hsa-miR-4722-5p	CLIP-seq
MIRT1486968	hsa-miR-4728-3p	CLIP-seq
MIRT2367169	hsa-miR-4742-5p	CLIP-seq
MIRT2660583	hsa-miR-4764-3p	CLIP-seq
MIRT2660584	hsa-miR-4797-3p	CLIP-seq
MIRT2660585	hsa-miR-497	CLIP-seq
MIRT2660586	hsa-miR-503	CLIP-seq
MIRT2660587	hsa-miR-548c-3p	CLIP-seq
MIRT2146537	hsa-miR-575	CLIP-seq
MIRT2660588	hsa-miR-584	CLIP-seq
MIRT2660589	hsa-miR-618	CLIP-seq
MIRT2463297	hsa-miR-642b	CLIP-seq
MIRT2660590	hsa-miR-646	CLIP-seq
MIRT1486920	hsa-miR-652	CLIP-seq
MIRT2660591	hsa-miR-657	CLIP-seq
MIRT1486973	hsa-miR-769-3p	CLIP-seq
MIRT2660592	hsa-miR-877	CLIP-seq
MIRT2146538	hsa-miR-922	CLIP-seq
MIRT2146525	hsa-miR-1185	CLIP-seq
MIRT2367133	hsa-miR-1207-3p	CLIP-seq
MIRT1486923	hsa-miR-122	CLIP-seq
MIRT1486877	hsa-miR-1253	CLIP-seq
MIRT2660562	hsa-miR-1267	CLIP-seq
MIRT2367135	hsa-miR-1273	CLIP-seq
MIRT2146526	hsa-miR-1286	CLIP-seq
MIRT2660564	hsa-miR-1303	CLIP-seq
MIRT1486925	hsa-miR-130a	CLIP-seq
MIRT1486926	hsa-miR-130b	CLIP-seq
MIRT1486928	hsa-miR-139-3p	CLIP-seq
MIRT2367138	hsa-miR-140-3p	CLIP-seq
MIRT2660565	hsa-miR-15a	CLIP-seq
MIRT2660566	hsa-miR-15b	CLIP-seq
MIRT2660567	hsa-miR-16	CLIP-seq
MIRT2367141	hsa-miR-1912	CLIP-seq
MIRT2660568	hsa-miR-195	CLIP-seq
MIRT1486931	hsa-miR-301a	CLIP-seq
MIRT1486932	hsa-miR-301b	CLIP-seq
MIRT1486885	hsa-miR-3065-5p	CLIP-seq
MIRT2660571	hsa-miR-3125	CLIP-seq
MIRT1486935	hsa-miR-3135b	CLIP-seq
MIRT2367150	hsa-miR-3192	CLIP-seq
MIRT2367153	hsa-miR-3613-3p	CLIP-seq
MIRT1486940	hsa-miR-3652	CLIP-seq
MIRT2660574	hsa-miR-3665	CLIP-seq
MIRT1486942	hsa-miR-3666	CLIP-seq
MIRT2146529	hsa-miR-3679-5p	CLIP-seq
MIRT2660575	hsa-miR-3691-3p	CLIP-seq
MIRT2660576	hsa-miR-3916	CLIP-seq
MIRT2660578	hsa-miR-424	CLIP-seq
MIRT2463296	hsa-miR-425	CLIP-seq
MIRT1486945	hsa-miR-4251	CLIP-seq
MIRT2146530	hsa-miR-4261	CLIP-seq
MIRT2660579	hsa-miR-4264	CLIP-seq
MIRT2367158	hsa-miR-4269	CLIP-seq
MIRT1486949	hsa-miR-4295	CLIP-seq
MIRT2367159	hsa-miR-4315	CLIP-seq
MIRT2660580	hsa-miR-4327	CLIP-seq
MIRT1486954	hsa-miR-4423-5p	CLIP-seq
MIRT1486955	hsa-miR-4430	CLIP-seq
MIRT1486960	hsa-miR-450b-3p	CLIP-seq
MIRT2367162	hsa-miR-4514	CLIP-seq
MIRT2660581	hsa-miR-4524	CLIP-seq
MIRT2146532	hsa-miR-4530	CLIP-seq
MIRT1486962	hsa-miR-454	CLIP-seq
MIRT1486964	hsa-miR-4663	CLIP-seq
MIRT2146533	hsa-miR-4676-5p	CLIP-seq
MIRT2367164	hsa-miR-4692	CLIP-seq
MIRT2367165	hsa-miR-4696	CLIP-seq
MIRT2367167	hsa-miR-4715-5p	CLIP-seq
MIRT2146535	hsa-miR-4722-5p	CLIP-seq
MIRT1486968	hsa-miR-4728-3p	CLIP-seq
MIRT2695072	hsa-miR-4735-5p	CLIP-seq
MIRT2367169	hsa-miR-4742-5p	CLIP-seq
MIRT2695073	hsa-miR-4794	CLIP-seq
MIRT2660584	hsa-miR-4797-3p	CLIP-seq
MIRT2660585	hsa-miR-497	CLIP-seq
MIRT2660586	hsa-miR-503	CLIP-seq
MIRT2660587	hsa-miR-548c-3p	CLIP-seq
MIRT2146537	hsa-miR-575	CLIP-seq
MIRT2463297	hsa-miR-642b	CLIP-seq
MIRT2660590	hsa-miR-646	CLIP-seq
MIRT1486920	hsa-miR-652	CLIP-seq
MIRT2660591	hsa-miR-657	CLIP-seq
MIRT1486973	hsa-miR-769-3p	CLIP-seq
MIRT2660592	hsa-miR-877	CLIP-seq
MIRT2146538	hsa-miR-922	CLIP-seq

Show/Hide all (57)

GO ID	Ontology	Definition	Evidence	Reference
GO:0005515	Function	Protein binding	IPI	19109425, 21802320, 23901104, 23918659, 24554770, 25445562, 25500191, 26496610, 28325809, 33422265, 33452816, 33845483, 33961781, 34232536, 35271311, 37821429
GO:0005737	Component	Cytoplasm	IEA
GO:0005764	Component	Lysosome	IDA	21802320
GO:0005764	Component	Lysosome	IEA
GO:0005765	Component	Lysosomal membrane	HDA	17897319
GO:0005765	Component	Lysosomal membrane	IDA	23167963
GO:0005765	Component	Lysosomal membrane	IEA
GO:0005768	Component	Endosome	IEA
GO:0005769	Component	Early endosome	IEA
GO:0005770	Component	Late endosome	IBA
GO:0005770	Component	Late endosome	IDA	33422265
GO:0005770	Component	Late endosome	IEA
GO:0005794	Component	Golgi apparatus	IEA
GO:0005798	Component	Golgi-associated vesicle	IMP	11412045
GO:0005829	Component	Cytosol	IDA	11412045
GO:0005829	Component	Cytosol	IEA
GO:0006623	Process	Protein targeting to vacuole	IBA
GO:0006623	Process	Protein targeting to vacuole	IEA
GO:0006886	Process	Intracellular protein transport	IEA
GO:0006914	Process	Autophagy	IEA
GO:0008017	Function	Microtubule binding	IEA
GO:0008270	Function	Zinc ion binding	IEA
GO:0008333	Process	Endosome to lysosome transport	IMP	25783203
GO:0009267	Process	Cellular response to starvation	IBA
GO:0010008	Component	Endosome membrane	IDA	21411634
GO:0010008	Component	Endosome membrane	IEA
GO:0010008	Component	Endosome membrane	TAS
GO:0015031	Process	Protein transport	IEA
GO:0015630	Component	Microtubule cytoskeleton	IEA
GO:0016020	Component	Membrane	IDA	11412045
GO:0016020	Component	Membrane	IEA
GO:0016192	Process	Vesicle-mediated transport	IEA
GO:0016192	Process	Vesicle-mediated transport	IMP	33851776
GO:0016236	Process	Macroautophagy	IBA
GO:0030123	Component	AP-3 adaptor complex	IDA	21411634
GO:0030136	Component	Clathrin-coated vesicle	IDA	21411634
GO:0030136	Component	Clathrin-coated vesicle	IEA
GO:0030897	Component	HOPS complex	IBA
GO:0030897	Component	HOPS complex	IDA	19109425, 23901104, 24554770, 37821429
GO:0030897	Component	HOPS complex	IEA
GO:0030897	Component	HOPS complex	IMP	33851776
GO:0030897	Component	HOPS complex	NAS	24554770
GO:0031410	Component	Cytoplasmic vesicle	IEA
GO:0031901	Component	Early endosome membrane	IEA
GO:0031902	Component	Late endosome membrane	IDA	23167963
GO:0031902	Component	Late endosome membrane	IEA
GO:0034058	Process	Endosomal vesicle fusion	IBA
GO:0034058	Process	Endosomal vesicle fusion	IEA
GO:0034058	Process	Endosomal vesicle fusion	IMP	23167963
GO:0034058	Process	Endosomal vesicle fusion	NAS	24554770
GO:0035542	Process	Regulation of SNARE complex assembly	NAS	24554770
GO:0042802	Function	Identical protein binding	IPI	24210660
GO:0046872	Function	Metal ion binding	IEA
GO:0048193	Process	Golgi vesicle transport	IMP	11412045
GO:0071439	Component	Clathrin complex	IDA	21411634
GO:1902501	Component	Lysosomal HOPS complex	IDA	21802320
GO:1902774	Process	Late endosome to lysosome transport	IMP	23167963

MIM	HGNC	e!Ensembl
605485	12713	ENSG00000006715

P49754

Protein name

Vacuolar protein sorting-associated protein 41 homolog (S53)

Protein function

Plays a role in vesicle-mediated protein trafficking to lysosomal compartments including the endocytic membrane transport and autophagic pathways. Acts as a component of the HOPS endosomal tethering complex. This complex is proposed to be involv

Family and domains

Pfam

Accession	ID	Position in sequence	Description	Type
PF00637	Clathrin	571 → 711	Region in Clathrin and VPS	Family

Tissue specificity

TISSUE SPECIFICITY: Expressed in cerebral cortex and cerebellum. Highly expressed in Purkinje cells. {ECO:0000269|PubMed:33764426}.

Sequence

MAEAEEQETGSLEESTDESEEEESEEEPKLKYERLSNGVTEILQKDAASCMTVHDKFLAL
GTHYGKVYLLDVQGNITQKFDVSPVKINQISLDESGEHMGVCSEDGKVQVFGLYSGEEFH
ETFDCPIKIIAVHPHFVRSSCKQFVTGGKKLLLFERSWMNRWKSAVLHEGEGNIRSVKWR
GHLIAWANNMGVKIFDIISKQRITNVPRDDISLRPDMYPCSLCWKDNVTLIIGWGTSVKV
CSVKERHASEMRDLPSRYVEIVSQFETEFYISGLAPLCDQLVVLSYVKEISEKTEREYCA
RPRLDIIQPLSETCEEISSDALTVRGFQENECRDYHLEYSEGESLFYIVSPRDVVVAKER
DQDDHIDWLLEKKKYEEALMAAEISQKNIKRHKILDIGLAYINHLVERGDYDIAARKCQK
ILGKNAALWEYEVYKFKEIGQLKAISPYLPRGDPVLKPLIYEMILHEFLESDYEGFATLI
REWPGDLYNNSVIVQAVRDHLKKDSQNKTLLKTLAELYTYDKNYGNALEIYLTLRHKDVF
QLIHKHNLFSSIKDKIVLLMDFDSEKAVDMLLDNEDKISIKKVVEELEDRPELQHVYLHK
LFKRDHHKGQRYHEKQISLYAEYDRPNLLPFLRDSTHCPLEKALEICQQRNFVEETVYLL
SRMGNSRSALKMIMEELHDVDKAIEFAKEQDDGELWEDLILYSIDKPPFITGLLNNIGTH
VDPILLIHRIKEGMEIPNLRDSLVKILQDYNLQILLREGCKKILVADSLSLLKKMHRTQM
KGVLVDEENICESCLSPILPSDAAKPFSVVVFHCRHMFHKECLPMPSMNSAAQFCNICSA
KNRGPGSAILEMKK

Sequence length

854

Interactions

View interactions

	KEGG
	Autophagy - animal Efferocytosis Salmonella infection

Evidence Score: ★☆☆☆☆ Gene-disease association found in Text Mining only ★★☆☆☆ Found in Text Mining and Unknown/Other Associations ★★★☆☆ Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆ ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★ ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)

Show/Hide Causal Diseases (2)

Phenotype Name	Clinical Significance	dbSNP ID	RCV Accession	Evidence Score
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Hyperimmunoglobulin D with periodic fever	Likely pathogenic	rs544223875	RCV004813176	★★★★★ ★★★★☆ ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Spinocerebellar ataxia, autosomal recessive 29	Pathogenic; Likely pathogenic	rs2116102196, rs544223875, rs1246628003, rs1220530084, rs199716160, rs1244049089, rs759692686	RCV001375925 RCV001530966 RCV001530967 RCV001530968 RCV001530969 RCV001530970 RCV003225793 View all (2 more)	★★★★★ ★★★★★ ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)

Show/Hide Unknown Diseases (12)

Phenotype Name	Clinical Significance	Source	Evidence Score
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
AUTOSOMAL RECESSIVE CEREBELLAR ATAXIA-MOVEMENT DISORDER SYNDROME	—	Orphanet	★★★★★ ★★☆☆☆ Found in Text Mining + Unknown/Other Associations
AUTOSOMAL RECESSIVE CEREBELLAR ATAXIA-SACCADIC INTRUSION SYNDROME	—	GWAS catalog	★★★★★ ★★☆☆☆ Found in Text Mining + Unknown/Other Associations
BREAST CARCINOMA	—	GWAS catalog	★★★★★ ★★☆☆☆ Found in Text Mining + Unknown/Other Associations
Cervical cancer	Benign	ClinVar	★★★★★ ★★☆☆☆ Found in Text Mining + Unknown/Other Associations
COLORECTAL CANCER	—	GWAS catalog	★★★★★ ★★☆☆☆ Found in Text Mining + Unknown/Other Associations
HYPERIMMUNOGLOBULINEMIA D	—	Disgenet	★★★★★ ★★☆☆☆ Found in Text Mining + Unknown/Other Associations
MAJOR DEPRESSIVE DISORDER	—	GWAS catalog	★★★★★ ★★☆☆☆ Found in Text Mining + Unknown/Other Associations
NEUROTIC DISORDER	—	GWAS catalog	★★★★★ ★★☆☆☆ Found in Text Mining + Unknown/Other Associations
Sarcoma	Benign	ClinVar	★★★★★ ★★☆☆☆ Found in Text Mining + Unknown/Other Associations
SPINOCEREBELLAR ATAXIA, AUTOSOMAL RECESSIVE 4	—	Disgenet	★★★★★ ★★☆☆☆ Found in Text Mining + Unknown/Other Associations
Thymoma	Uncertain significance	ClinVar	★★★★★ ★★☆☆☆ Found in Text Mining + Unknown/Other Associations
Thyroid cancer, nonmedullary, 1	Uncertain significance	ClinVar	★★★★★ ★★☆☆☆ Found in Text Mining + Unknown/Other Associations

Show/Hide Text Mining Associations (6)

Disease Name	Disease (Merged)	Source	PMID	Evidence Score
Associations from Text Mining Disease associations identified through text mining
Colon Carcinoma	Colon Carcinoma	BEFREE	31365870	★★★★★ ★☆☆☆☆ Found in Text Mining only
Major Depressive Disorder	Mental Depression	GWASCAT_DG	29942085	★★★★★ ★★☆☆☆ Found in Text Mining + Unknown/Other Associations
Malignant Neoplasms	Malignant Neoplasm	BEFREE	21685375	★★★★★ ★☆☆☆☆ Found in Text Mining only
Malignant tumor of colon	Colonic Neoplasms	BEFREE	31365870	★★★★★ ★☆☆☆☆ Found in Text Mining only
melanoma	Melanoma	BEFREE	25303718	★★★★★ ★☆☆☆☆ Found in Text Mining only
Parkinson Disease	Parkinson disease	BEFREE	19850127, 22323726, 30508205	★★★★★ ★☆☆☆☆ Found in Text Mining only

VPS41 (VPS41 subunit of HOPS complex)