Gene Gene information from NCBI Gene database.
Entrez ID 2629
Gene name Glucosylceramidase beta 1
Gene symbol GBA1
Synonyms (NCBI Gene)
GBAGCBGLUC
Chromosome 1
Chromosome location 1q22
SNPs SNP information provided by dbSNP.
110
SNP ID Visualize variation Clinical significance Consequence
rs364897 T>C Likely-pathogenic, pathogenic Coding sequence variant, missense variant
rs368060 C>G Benign, pathogenic Coding sequence variant, missense variant
rs381418 A>C Pathogenic Coding sequence variant, missense variant
rs381737 A>C,T Pathogenic Coding sequence variant, missense variant
rs409652 C>T Pathogenic Coding sequence variant, missense variant
miRNA miRNA information provided by mirtarbase database.
257
miRTarBase ID miRNA Experiments Reference
MIRT045817 hsa-miR-191-5p CLASH 23622248
MIRT456295 hsa-miR-128-3p PAR-CLIP 23592263
MIRT456294 hsa-miR-216a-3p PAR-CLIP 23592263
MIRT456293 hsa-miR-3681-3p PAR-CLIP 23592263
MIRT456292 hsa-miR-6733-3p PAR-CLIP 23592263
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
110
GO ID Ontology Definition Evidence Reference
GO:0000423 Process Mitophagy IEA
GO:0004336 Function Galactosylceramidase activity IEA
GO:0004348 Function Glucosylceramidase activity IBA
GO:0004348 Function Glucosylceramidase activity IDA 9201993, 16293621, 19279011, 24211208
GO:0004348 Function Glucosylceramidase activity IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
606463 4177 ENSG00000177628
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
P04062
Protein name Lysosomal acid glucosylceramidase (Lysosomal acid GCase) (EC 3.2.1.45) (Acid beta-glucosidase) (Alglucerase) (Beta-glucocerebrosidase) (Beta-GC) (Beta-glucosylceramidase 1) (Cholesterol glucosyltransferase) (SGTase) (EC 2.4.1.-) (Cholesteryl-beta-glucosid
Protein function Glucosylceramidase that catalyzes, within the lysosomal compartment, the hydrolysis of glucosylceramides/GlcCers (such as beta-D-glucosyl-(1<->1')-N-acylsphing-4-enine) into free ceramides (such as N-acylsphing-4-enine) and glucose (PubMed:15916
PDB 1OGS , 1Y7V , 2F61 , 2J25 , 2NSX , 2NT0 , 2NT1 , 2V3D , 2V3E , 2V3F , 2VT0 , 2WCG , 2WKL , 2XWD , 2XWE , 3GXD , 3GXF , 3GXI , 3GXM , 3KE0 , 3KEH , 3RIK , 3RIL , 5LVX , 6MOZ , 6Q1N , 6Q1P , 6Q6K , 6Q6L , 6Q6N , 6T13 , 6TJJ , 6TJK , 6TJQ , 6TN1 , 6YTP , 6YTR , 6YUT , 6YV3 , 6Z39 , 6Z3I , 7NWV , 8AWK , 8AWR , 8AX3 , 8P3E , 8P41 , 9F9Z , 9FA3 , 9FA6 , 9FAD
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF02055 Glyco_hydro_30 117 466 Glycosyl hydrolase family 30 TIM-barrel domain Domain
PF17189 Glyco_hydro_30C 469 531 Glycosyl hydrolase family 30 beta sandwich domain Domain
Sequence
Sequence length 536
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Other glycan degradation
Sphingolipid metabolism
Metabolic pathways
Lysosome
  Glycosphingolipid metabolism
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
67
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Abnormal bleeding Likely pathogenic; Pathogenic rs76763715, rs121908311, rs867929413 RCV001270528
RCV001270486
RCV001270597
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Akinesia Likely pathogenic; Pathogenic rs76763715 RCV000414782
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Clear cell carcinoma of kidney Likely pathogenic; Pathogenic rs104886460 RCV005886260
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Dementia, Lewy body, susceptibility to Pathogenic; Likely pathogenic rs421016, rs76763715 RCV000004513
RCV000004517
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
Acute myeloid leukemia Benign; Likely benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Alpha thalassemia-X-linked intellectual disability syndrome Conflicting classifications of pathogenicity ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
AUTOSOMAL DOMINANT LATE ONSET PARKINSON DISEASE Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
BRAIN ANEURYSM GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Action Myoclonus-Renal Failure Syndrome Action Myoclonus-Renal Failure Syndrome BEFREE 19933215
★☆☆☆☆
Found in Text Mining only
Adult Diffuse Large B-Cell Lymphoma B-cell Lymphoma BEFREE 12819018, 20145271, 24190977, 31444945
★☆☆☆☆
Found in Text Mining only
Akinesia Akinesia CLINVAR_DG
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Akinesia Akinesia HPO_DG
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Alzheimer Disease Alzheimer disease Pubtator 19433657, 23035075, 33773368, 34308904 Associate
★☆☆☆☆
Found in Text Mining only
Alzheimer disease type 1 Alzheimer disease Pubtator 28580830 Associate
★☆☆☆☆
Found in Text Mining only
Amyotrophic Lateral Sclerosis Amyotrophic Lateral Sclerosis BEFREE 28701774
★☆☆☆☆
Found in Text Mining only
Anemia Anemia BEFREE 14984463, 23400823, 28580830
★☆☆☆☆
Found in Text Mining only
Anemia Anemia Pubtator 36927652 Associate
★☆☆☆☆
Found in Text Mining only
Anemia Anemia HPO_DG
★☆☆☆☆
Found in Text Mining only