Gene Gene information from NCBI Gene database.
Entrez ID 26277
Gene name TERF1 interacting nuclear factor 2
Gene symbol TINF2
Synonyms (NCBI Gene)
DKCA3DKCA5TIN2
Chromosome 14
Chromosome location 14q12
Summary This gene encodes one of the proteins of the shelterin, or telosome, complex which protects telomeres by allowing the cell to distinguish between telomeres and regions of DNA damage. The protein encoded by this gene is a critical part of shelterin; it int
SNPs SNP information provided by dbSNP.
25
SNP ID Visualize variation Clinical significance Consequence
rs121918543 T>A,C Pathogenic Stop gained, coding sequence variant, 3 prime UTR variant, missense variant
rs121918544 C>T Pathogenic Missense variant, coding sequence variant, 3 prime UTR variant
rs121918545 G>A,T Pathogenic Missense variant, coding sequence variant, 3 prime UTR variant
rs142777869 G>T Benign, pathogenic, likely-benign Missense variant, coding sequence variant, 3 prime UTR variant
rs199422311 G>A,C Pathogenic Coding sequence variant, 3 prime UTR variant, missense variant
miRNA miRNA information provided by mirtarbase database.
109
miRTarBase ID miRNA Experiments Reference
MIRT030020 hsa-miR-26b-5p Microarray 19088304
MIRT1425492 hsa-miR-3159 CLIP-seq
MIRT1425493 hsa-miR-4274 CLIP-seq
MIRT1425494 hsa-miR-4280 CLIP-seq
MIRT1425495 hsa-miR-4423-3p CLIP-seq
Transcription factors Transcription factors information provided by TRRUST V2 database.
1
Transcription factor Regulation Reference
SP1 Unknown 9399940
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
32
GO ID Ontology Definition Evidence Reference
GO:0000781 Component Chromosome, telomeric region HDA 19135898
GO:0000781 Component Chromosome, telomeric region IDA 10581025, 12768206, 15133513, 15380063, 23685356, 24270157
GO:0000781 Component Chromosome, telomeric region IEA
GO:0000783 Component Nuclear telomere cap complex IDA 16880378
GO:0003677 Function DNA binding IDA 10581025
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
604319 11824 ENSG00000092330
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q9BSI4
Protein name TERF1-interacting nuclear factor 2 (TRF1-interacting nuclear protein 2)
Protein function Component of the shelterin complex (telosome) that is involved in the regulation of telomere length and protection. Shelterin associates with arrays of double-stranded TTAGGG repeats added by telomerase and protects chromosome ends; without its
PDB 3BQO , 3BU8 , 5XYF
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF14973 TINF2_N 20 169 TERF1-interacting nuclear factor 2 N-terminus Family
Tissue specificity TISSUE SPECIFICITY: Detected in heart, brain, placenta, lung, liver, skeletal muscle, kidney and pancreas.
Sequence
MATPLVAGPAALRFAAAASWQVVRGRCVEHFPRVLEFLRSLRAVAPGLVRYRHHERLCMG
LKAKVVVELILQGRPWAQVLKALNHHFPESGPIVRDPKATKQDLRKILEAQETFYQQVKQ
LSEAPVDLASKLQELEQEYGEPFLAAMEKLLFEYLCQLEKALPTPQAQQ
LQDVLSWMQPG
VSITSSLAWRQYGVDMGWLLPECSVTDSVNLAEPMEQNPPQQQRLALHNPLPKAKPGTHL
PQGPSSRTHPEPLAGRHFNLAPLGRRRVQSQWASTRGGHKERPTVMLFPFRNLGSPTQVI
SKPESKEEHAIYTADLAMGTRAASTGKSKSPCQTLGGRALKENPVDLPATEQKENCLDCY
MDPLRLSLLPPRARKPVCPPSLCSSVITIGDLVLDSDEEENGQGEGKESLENYQKTKFDT
LIPTLCEYLPPSGHGAIPVSSCDCRDSSRPL
Sequence length 451
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  Reactome
    Recognition and association of DNA glycosylase with site containing an affected purine
Cleavage of the damaged purine
Packaging Of Telomere Ends
Telomere Extension By Telomerase
DNA Damage/Telomere Stress Induced Senescence
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
21
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Dyskeratosis congenita Pathogenic; Likely pathogenic rs2502456306, rs2502455869, rs121918544, rs121918545, rs2502455630, rs199422315, rs199422314, rs199422316 RCV002421424
RCV002414379
RCV001382425
RCV001382426
RCV001054196
View all (4 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Dyskeratosis congenita, autosomal dominant 1 Pathogenic; Likely pathogenic rs121918543, rs121918544, rs121918545, rs199422311, rs199422315, rs199422314, rs199422316 RCV000032165
RCV002490324
RCV000032168
RCV000032169
RCV000032171
View all (3 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Dyskeratosis congenita, autosomal dominant 3 Pathogenic; Likely pathogenic rs121918543, rs121918544, rs121918545, rs1555304055, rs387907153, rs387907154, rs863223324 RCV000005977
RCV000005978
RCV000005980
RCV000005981
RCV004560351
View all (3 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Long telomere syndrome Pathogenic rs2502468974, rs2502459528 RCV004566523
RCV004566524
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
Aplastic anemia not provided ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
BONE MARROW DISEASES CTD, Disgenet
CTD, Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
CEREBELLAR DISEASES CTD, Disgenet
CTD, Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Cervical cancer Uncertain significance ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Acute leukemia Leukemia BEFREE 12168944
★☆☆☆☆
Found in Text Mining only
Adult T-Cell Lymphoma/Leukemia T-Cell Lymphoma/Leukemia BEFREE 16786598
★☆☆☆☆
Found in Text Mining only
Alopecia Alopecia HPO_DG
★☆☆☆☆
Found in Text Mining only
Alveolitis Extrinsic Allergic Extrinsic allergic alveolitis Pubtator 31268371 Associate
★☆☆☆☆
Found in Text Mining only
Anemia Anemia HPO_DG
★☆☆☆☆
Found in Text Mining only
Anemia Aplastic Aplastic anemia Pubtator 18669893, 21931702 Associate
★☆☆☆☆
Found in Text Mining only
Aplastic Anemia Aplastic anemia BEFREE 18669893
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Aplastic Anemia Aplastic anemia HPO_DG
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Bone Marrow Diseases Bone Marrow Diseases CTD_human_DG 18252230
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Bone Marrow Failure Disorders Bone marrow failure syndromes Pubtator 21865325, 21931702, 25067791, 29742735, 35590014 Associate
★☆☆☆☆
Found in Text Mining only