Gene Gene information from NCBI Gene database.
Entrez ID 26275
Gene name 3-hydroxyisobutyryl-CoA hydrolase
Gene symbol HIBCH
Synonyms (NCBI Gene)
HIBYLCOAH
Chromosome 2
Chromosome location 2q32.2
Summary This gene encodes the enzyme responsible for hydrolysis of both HIBYL-CoA and beta-hydroxypropionyl-CoA. Mutations in this gene have been associated with 3-hyroxyisobutyryl-CoA hydrolase deficiency. Alternative splicing results in multiple transcript vari
SNPs SNP information provided by dbSNP.
19
SNP ID Visualize variation Clinical significance Consequence
rs74832989 C>A,G,T Benign, pathogenic Coding sequence variant, missense variant, 5 prime UTR variant, non coding transcript variant
rs121918329 T>C Likely-pathogenic, pathogenic Non coding transcript variant, genic upstream transcript variant, coding sequence variant, missense variant
rs143746450 C>A,T Pathogenic, likely-pathogenic Splice donor variant
rs144053672 C>T Conflicting-interpretations-of-pathogenicity Non coding transcript variant, coding sequence variant, missense variant
rs755786597 C>A,T Pathogenic Stop gained, missense variant, coding sequence variant, non coding transcript variant
miRNA miRNA information provided by mirtarbase database.
92
miRTarBase ID miRNA Experiments Reference
MIRT1045323 hsa-miR-1324 CLIP-seq
MIRT1045324 hsa-miR-4645-3p CLIP-seq
MIRT1045325 hsa-miR-548aa CLIP-seq
MIRT1045326 hsa-miR-548ac CLIP-seq
MIRT1045327 hsa-miR-548d-3p CLIP-seq
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
15
GO ID Ontology Definition Evidence Reference
GO:0003860 Function 3-hydroxyisobutyryl-CoA hydrolase activity EXP 8824301
GO:0003860 Function 3-hydroxyisobutyryl-CoA hydrolase activity IBA
GO:0003860 Function 3-hydroxyisobutyryl-CoA hydrolase activity IDA 8824301
GO:0003860 Function 3-hydroxyisobutyryl-CoA hydrolase activity IEA
GO:0003860 Function 3-hydroxyisobutyryl-CoA hydrolase activity TAS
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
610690 4908 ENSG00000198130
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q6NVY1
Protein name 3-hydroxyisobutyryl-CoA hydrolase, mitochondrial (EC 3.1.2.4) (3-hydroxyisobutyryl-coenzyme A hydrolase) (HIB-CoA hydrolase) (HIBYL-CoA-H)
Protein function Hydrolyzes 3-hydroxyisobutyryl-CoA (HIBYL-CoA), a saline catabolite. Has high activity toward isobutyryl-CoA. Could be an isobutyryl-CoA dehydrogenase that functions in valine catabolism. Also hydrolyzes 3-hydroxypropanoyl-CoA. {ECO:0000269|PubM
PDB 3BPT
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF16113 ECH_2 46 376 Enoyl-CoA hydratase/isomerase Domain
Tissue specificity TISSUE SPECIFICITY: Highly expressed in liver and kidney, also detected in heart, muscle and brain (at protein level). Not detected in lung. {ECO:0000269|PubMed:8824301}.
Sequence
Sequence length 386
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Valine, leucine and isoleucine degradation
beta-Alanine metabolism
Propanoate metabolism
Metabolic pathways
Carbon metabolism
  Branched-chain amino acid catabolism
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
24
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
3-hydroxyisobutyryl-CoA hydrolase deficiency Likely pathogenic; Pathogenic rs2105952039, rs759563092, rs1203170244, rs2105985080, rs915412371, rs1364971527, rs786200864, rs778922921, rs786204004, rs1252871654, rs751676774, rs757976755, rs148693438, rs767597690, rs770114459
View all (15 more)
RCV001782252
RCV001806394
RCV001809189
RCV002036141
RCV001980827
View all (25 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Cervical cancer Likely pathogenic rs915412371 RCV005925520
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
HIBCH-related disorder Likely pathogenic; Pathogenic rs776592661 RCV003413630
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Neurodegeneration due to 3-hydroxyisobutyryl coenzyme A hydrolase deficiency Likely pathogenic rs1553501873 RCV000625906
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
Acute myeloid leukemia Benign; Likely benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
BETA-HYDROXYISOBUTYRYL COA DEACYLASE DEFICIENCY CTD, Disgenet
CTD, Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
CENTRAL NERVOUS SYSTEM CANCER GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Clear cell carcinoma of kidney Benign; Likely benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Agenesis of corpus callosum Agenesis Of Corpus Callosum HPO_DG
★☆☆☆☆
Found in Text Mining only
Alzheimer Disease Alzheimer disease Pubtator 40286336 Associate
★☆☆☆☆
Found in Text Mining only
Beta-Hydroxyisobutyryl CoA Deacylase Deficiency Beta-Hydroxyisobutyryl CoA Deacylase Deficiency ORPHANET_DG 17160907, 24299452
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Beta-Hydroxyisobutyryl CoA Deacylase Deficiency Beta-Hydroxyisobutyryl CoA Deacylase Deficiency UNIPROT_DG 17160907
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Beta-Hydroxyisobutyryl CoA Deacylase Deficiency Beta-Hydroxyisobutyryl CoA Deacylase Deficiency CLINGEN_DG 17160907, 24299452, 26026795, 26163321, 27896122, 29703962, 30847210
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Beta-Hydroxyisobutyryl CoA Deacylase Deficiency Beta-Hydroxyisobutyryl CoA Deacylase Deficiency CLINVAR_DG 17160907, 26163321
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Beta-Hydroxyisobutyryl CoA Deacylase Deficiency Beta-Hydroxyisobutyryl CoA Deacylase Deficiency GENOMICS_ENGLAND_DG 24299452, 27604308, 7122152
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Beta-Hydroxyisobutyryl CoA Deacylase Deficiency Beta-Hydroxyisobutyryl CoA Deacylase Deficiency BEFREE 25251209
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Beta-Hydroxyisobutyryl CoA Deacylase Deficiency Beta-Hydroxyisobutyryl CoA Deacylase Deficiency CTD_human_DG
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Carcinoma Renal Cell Renal cell carcinoma Pubtator 37638005 Associate
★☆☆☆☆
Found in Text Mining only