Gene Gene information from NCBI Gene database.
Entrez ID 2626
Gene name GATA binding protein 4
Gene symbol GATA4
Synonyms (NCBI Gene)
ASD2TACHDTOFVSD1
Chromosome 8
Chromosome location 8p23.1
Summary This gene encodes a member of the GATA family of zinc-finger transcription factors. Members of this family recognize the GATA motif which is present in the promoters of many genes. This protein is thought to regulate genes involved in embryogenesis and in
SNPs SNP information provided by dbSNP.
39
SNP ID Visualize variation Clinical significance Consequence
rs745379 A>G Conflicting-interpretations-of-pathogenicity Intron variant
rs804280 C>A,G,T Pathogenic, uncertain-significance Intron variant
rs3729851 G>A Conflicting-interpretations-of-pathogenicity Intron variant
rs3729856 A>G Benign, likely-pathogenic Missense variant, coding sequence variant
rs3735819 T>C,G Conflicting-interpretations-of-pathogenicity Intron variant
miRNA miRNA information provided by mirtarbase database.
97
miRTarBase ID miRNA Experiments Reference
MIRT000393 hsa-miR-1-3p Luciferase reporter assay 19188439
MIRT004008 hsa-miR-200b-3p Microarray 17875710
MIRT006808 hsa-miR-26b-5p ImmunocytochemistryLuciferase reporter assayNorthern blotqRT-PCRWestern blot 22219180
MIRT047394 hsa-miR-34a-5p CLASH 23622248
MIRT004008 hsa-miR-200b-3p FlowqRT-PCRWestern blot 23558708
Transcription factors Transcription factors information provided by TRRUST V2 database.
6
Transcription factor Regulation Reference
HAND2 Unknown 11994297
HEY1 Repression 16199874
HEY2 Repression 16199874
MYC Activation 23239811
NANOG Repression 15983365
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
93
GO ID Ontology Definition Evidence Reference
GO:0000122 Process Negative regulation of transcription by RNA polymerase II IBA
GO:0000785 Component Chromatin ISA
GO:0000976 Function Transcription cis-regulatory region binding IDA 9566909
GO:0000976 Function Transcription cis-regulatory region binding IEA
GO:0000977 Function RNA polymerase II transcription regulatory region sequence-specific DNA binding IGI 21330551
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
600576 4173 ENSG00000136574
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
P43694
Protein name Transcription factor GATA-4 (GATA-binding factor 4)
Protein function Transcriptional activator that binds to the consensus sequence 5'-AGATAG-3' and plays a key role in cardiac development and function (PubMed:24000169, PubMed:27984724, PubMed:35182466). In cooperation with TBX5, it binds to cardiac super-enhance
PDB 2M9W , 8VG0 , 8VG1
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF05349 GATA-N 1 205 GATA-type transcription activator, N-terminal Family
PF00320 GATA 217 251 GATA zinc finger Domain
PF00320 GATA 271 305 GATA zinc finger Domain
Sequence
Sequence length 442
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  cGMP-PKG signaling pathway
Cellular senescence
Tight junction
Thyroid hormone signaling pathway
  YAP1- and WWTR1 (TAZ)-stimulated gene expression
Synthesis, secretion, and inactivation of Glucose-dependent Insulinotropic Polypeptide (GIP)
Physiological factors
Factors involved in megakaryocyte development and platelet production
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
80
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
46,XY sex reversal 3 Pathogenic rs1585684790 RCV001007692
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Atrial septal defect 2 Likely pathogenic; Pathogenic rs180765750, rs2130307055, rs1799991762, rs2486974873, rs104894073, rs1585703301, rs104894074, rs2486974458, rs2486975103 RCV001330680
RCV001823084
RCV005863608
RCV002471849
RCV000009596
View all (5 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Atrioventricular septal defect 4 Likely pathogenic; Pathogenic rs180765750, rs1799991762, rs2130313407, rs2130068999, rs2130313276, rs104894073, rs2486781068, rs2486996437, rs2486966933, rs2486975023, rs1249347695, rs368489876 RCV002546407
RCV001907365
RCV001970824
RCV002007586
RCV001963090
View all (8 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Congenital heart disease Pathogenic rs864321698, rs864321703, rs864321700, rs864321701, rs864321702, rs864321705, rs864321704, rs1554498312 RCV000203585
RCV000203605
RCV000203602
RCV000203586
RCV000203594
View all (3 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
46,XY PARTIAL GONADAL DYSGENESIS GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Achondroplasia Benign; Likely benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ALZHEIMER DISEASE GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ASTHMA GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
46,XY partial gonadal dysgenesis 46, XY partial gonadal dysgenesis ORPHANET_DG 21220346
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
46,XY partial gonadal dysgenesis 46, XY partial gonadal dysgenesis Orphanet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
8p23.1 microdeletion syndrome 8p23.1 microdeletion syndrome Orphanet
★☆☆☆☆
Found in Text Mining only
Acute lymphocytic leukemia Lymphocytic Leukemia BEFREE 28849107
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma Adenocarcinoma BEFREE 10728696, 14581353, 22472323, 28052061
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma Of Esophagus Esophageal Cancer BEFREE 16823849
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma of lung (disorder) Lung adenocarcinoma BEFREE 23239811
★☆☆☆☆
Found in Text Mining only
Adenoma Adenoma BEFREE 15666845, 28977799
★☆☆☆☆
Found in Text Mining only
Adrenal Gland Neoplasms Adrenal neoplasia BEFREE 10449810
★☆☆☆☆
Found in Text Mining only
Adrenal Gland Pheochromocytoma Adrenal Gland Pheochromocytoma BEFREE 10449810
★☆☆☆☆
Found in Text Mining only