Gene Gene information from NCBI Gene database.
Entrez ID 2624
Gene name GATA binding protein 2
Gene symbol GATA2
Synonyms (NCBI Gene)
DCMLIMD21MONOMACNFE1B
Chromosome 3
Chromosome location 3q21.3
Summary This gene encodes a member of the GATA family of zinc-finger transcription factors that are named for the consensus nucleotide sequence they bind in the promoter regions of target genes. The encoded protein plays an essential role in regulating transcript
SNPs SNP information provided by dbSNP.
56
SNP ID Visualize variation Clinical significance Consequence
rs142993548 C>A,G,T Conflicting-interpretations-of-pathogenicity, likely-benign Synonymous variant, coding sequence variant
rs143590990 G>A,C Conflicting-interpretations-of-pathogenicity, uncertain-significance Missense variant, coding sequence variant
rs376003468 G>A,T Likely-pathogenic, likely-benign Missense variant, coding sequence variant, synonymous variant
rs387906629 G>A Likely-pathogenic, pathogenic Missense variant, coding sequence variant
rs387906630 G>A,C Uncertain-significance, pathogenic Missense variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
93
miRTarBase ID miRNA Experiments Reference
MIRT029763 hsa-miR-26b-5p Microarray 19088304
MIRT054893 hsa-miR-27a-3p Luciferase reporter assay 23322776
MIRT054893 hsa-miR-27a-3p Luciferase reporter assay 23322776
MIRT734853 hsa-miR-675-5p Luciferase reporter assayWestern blottingRNA-seq 33513878
MIRT1012484 hsa-miR-200b CLIP-seq
Transcription factors Transcription factors information provided by TRRUST V2 database.
2
Transcription factor Regulation Reference
HDAC3 Repression 11567998
NANOG Repression 15983365
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
112
GO ID Ontology Definition Evidence Reference
GO:0000122 Process Negative regulation of transcription by RNA polymerase II IBA
GO:0000122 Process Negative regulation of transcription by RNA polymerase II IEA
GO:0000978 Function RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
GO:0000978 Function RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
GO:0000981 Function DNA-binding transcription factor activity, RNA polymerase II-specific IBA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
137295 4171 ENSG00000179348
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
P23769
Protein name Endothelial transcription factor GATA-2 (GATA-binding protein 2)
Protein function Transcriptional activator which regulates endothelin-1 gene expression in endothelial cells. Binds to the consensus sequence 5'-AGATAG-3'.
PDB 5O9B , 6ZFV
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00320 GATA 295 329 GATA zinc finger Domain
PF00320 GATA 349 383 GATA zinc finger Domain
Tissue specificity TISSUE SPECIFICITY: Endothelial cells.
Sequence
MEVAPEQPRWMAHPAVLNAQHPDSHHPGLAHNYMEPAQLLPPDEVDVFFNHLDSQGNPYY
ANPAHARARVSYSPAHARLTGGQMCRPHLLHSPGLPWLDGGKAALSAAAAHHHNPWTVSP
FSKTPLHPSAAGGPGGPLSVYPGAGGGSGGGSGSSVASLTPTAAHSGSHLFGFPPTPPKE
VSPDPSTTGAASPASSSAGGSAARGEDKDGVKYQVSLTESMKMESGSPLRPGLATMGTQP
ATHHPIPTYPSYVPAAAHDYSSGLFHPGGFLGGPASSFTPKQRSKARSCSEGRECVNCGA
TATPLWRRDGTGHYLCNACGLYHKMNGQN
RPLIKPKRRLSAARRAGTCCANCQTTTTTLW
RRNANGDPVCNACGLYYKLHNVN
RPLTMKKEGIQTRNRKMSNKSKKSKKGAECFEELSKC
MQEKSSPFSAAALAGHMAPVGHLPPFSHSGHILPTPTPIHPSSSLSFGHPHPSSMVTAMG
Sequence length 480
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  Reactome
    RUNX1 regulates transcription of genes involved in differentiation of HSCs
Factors involved in megakaryocyte development and platelet production
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
36
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Acute myeloid leukemia Likely pathogenic; Pathogenic rs1426175410 RCV003224332
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Deafness-lymphedema-leukemia syndrome Pathogenic; Likely pathogenic rs146150325, rs1576748366, rs2107672568, rs2107672654, rs1338194519, rs2107667915, rs2107668010, rs1553770434, rs2107668072, rs2107668103, rs2107668602, rs148942346, rs2107668794, rs2107673633, rs2107668041
View all (142 more)
RCV001542132
RCV001389075
RCV001389077
RCV001381968
RCV001541963
View all (172 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
GATA2 deficiency with susceptibility to MDS/AML Pathogenic; Likely pathogenic rs146150325, rs1338194519, rs2107667915, rs2107668010, rs1553770434, rs2107668072, rs2107668103, rs2107668602, rs148942346, rs2107668794, rs2107673633, rs2107668041, rs2107668121, rs2107668551, rs2107668560
View all (112 more)
RCV001542132
RCV001541963
RCV001541958
RCV001541957
RCV001541954
View all (138 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
GATA2-related disorder Likely pathogenic; Pathogenic rs867160952, rs2472934740, rs387906632, rs1553770510 RCV004728765
RCV005239516
RCV003891441
RCV003892022
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
Anemia Uncertain significance ClinVar
Disgenet
★★★☆☆
Reported in Unknown/Other Associations (≥2 sources)
ARTERIOSCLEROSIS CTD, Disgenet
CTD, Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
CARDIOVASCULAR ABNORMALITIES CTD, Disgenet
CTD, Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
CARTILAGE DISEASES CTD, Disgenet
CTD, Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Acute Erythroblastic Leukemia Erythroblastic Leukemia BEFREE 27389056
★☆☆☆☆
Found in Text Mining only
Acute leukemia Leukemia HPO_DG
★☆☆☆☆
Found in Text Mining only
Acute lymphocytic leukemia Lymphocytic Leukemia BEFREE 30802360, 7579412
★☆☆☆☆
Found in Text Mining only
Acute monocytic leukemia Monocytic Leukemia BEFREE 22147895, 24514424, 30190467, 31711889
★☆☆☆☆
Found in Text Mining only
Acute Myeloid Leukemia (AML-M2) Leukemia CTD_human_DG 21892158, 21892162
★☆☆☆☆
Found in Text Mining only
Acute Myeloid Leukemia, M1 Myeloid Leukemia CTD_human_DG 21892158, 21892162
★☆☆☆☆
Found in Text Mining only
Acute Myeloid Leukemia, M1 Myeloid Leukemia BEFREE 25241285
★☆☆☆☆
Found in Text Mining only
Acute myelomonocytic leukemia Myelomonocytic Leukemia BEFREE 25241285, 30190467
★☆☆☆☆
Found in Text Mining only
Acute Promyelocytic Leukemia Promyelocytic Leukemia BEFREE 11964310
★☆☆☆☆
Found in Text Mining only
Acute Undifferentiated Leukemia Leukemia BEFREE 17644741
★☆☆☆☆
Found in Text Mining only