Gene Gene information from NCBI Gene database.
Entrez ID 2623
Gene name GATA binding protein 1
Gene symbol GATA1
Synonyms (NCBI Gene)
CNSHA9ERYF1GATA-1GF-1GF1HAEADANF-E1NFE1XLANPXLTDAXLTT
Chromosome X
Chromosome location Xp11.23
Summary This gene encodes a protein which belongs to the GATA family of transcription factors. The protein plays an important role in erythroid development by regulating the switch of fetal hemoglobin to adult hemoglobin. Mutations in this gene have been associat
SNPs SNP information provided by dbSNP.
21
SNP ID Visualize variation Clinical significance Consequence
rs104894808 G>A,T Pathogenic, likely-pathogenic Coding sequence variant, missense variant
rs104894809 G>A Pathogenic Coding sequence variant, missense variant
rs104894815 G>A Pathogenic Coding sequence variant, missense variant
rs104894816 A>G Pathogenic, likely-pathogenic Coding sequence variant, missense variant
rs137852312 GG>TC Pathogenic Coding sequence variant, missense variant
miRNA miRNA information provided by mirtarbase database.
14
miRTarBase ID miRNA Experiments Reference
MIRT017923 hsa-miR-335-5p Microarray 18185580
MIRT733501 hsa-miR-210-3p Luciferase reporter assayqRT-PCRWestern blotting 34109429
MIRT733501 hsa-miR-210-3p Luciferase reporter assayqRT-PCRWestern blotting 34109429
MIRT1012473 hsa-miR-1254 CLIP-seq
MIRT1012474 hsa-miR-3116 CLIP-seq
Transcription factors Transcription factors information provided by TRRUST V2 database.
13
Transcription factor Regulation Reference
BCL11A Activation 23071749
BCL11A Unknown 20542454
CBFB Unknown 8683991
CEBPE Repression 12202480
FLI1 Activation 12724402
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
101
GO ID Ontology Definition Evidence Reference
GO:0000122 Process Negative regulation of transcription by RNA polymerase II IBA
GO:0000122 Process Negative regulation of transcription by RNA polymerase II IDA 22235304
GO:0000122 Process Negative regulation of transcription by RNA polymerase II IEA
GO:0000785 Component Chromatin ISA
GO:0000976 Function Transcription cis-regulatory region binding IMP 10700180
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
305371 4170 ENSG00000102145
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
P15976
Protein name Erythroid transcription factor (Eryf1) (GATA-binding factor 1) (GATA-1) (GF-1) (NF-E1 DNA-binding protein)
Protein function Transcriptional activator or repressor which serves as a general switch factor for erythroid development (PubMed:35030251). It binds to DNA sites with the consensus sequence 5'-[AT]GATA[AG]-3' within regulatory regions of globin genes and of oth
PDB 6G0Q
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00320 GATA 204 238 GATA zinc finger Domain
PF00320 GATA 258 292 GATA zinc finger Domain
Tissue specificity TISSUE SPECIFICITY: Erythrocytes. {ECO:0000269|PubMed:8524811}.
Sequence
MEFPGLGSLGTSEPLPQFVDPALVSSTPESGVFFPSGPEGLDAAASSTAPSTATAAAAAL
AYYRDAEAYRHSPVFQVYPLLNCMEGIPGGSPYAGWAYGKTGLYPASTVCPTREDSPPQA
VEDLDGKGSTSFLETLKTERLSPDLLTLGPALPSSLPVPNSAYGGPDFSSTFFSPTGSPL
NSAAYSSPKLRGTLPLPPCEARECVNCGATATPLWRRDRTGHYLCNACGLYHKMNGQNRP
LIRPKKRLIVSKRAGTQCTNCQTTTTTLWRRNASGDPVCNACGLYYKLHQVNRPLTMRKD
GIQTRNRKASGKGKKKRGSSLGGTGAAEGPAGGFMVVAGGSGSGNCGEVASGLTLGPPGT
AHLYQGLGPVVLSGPVSHLMPFPGPLLGSPTGSFPTGPMPPTTSTTVVAPLSS
Sequence length 413
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  Reactome
    RUNX1 regulates genes involved in megakaryocyte differentiation and platelet function
RUNX1 regulates transcription of genes involved in differentiation of HSCs
Factors involved in megakaryocyte development and platelet production
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
35
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Acute megakaryoblastic leukemia Pathogenic rs398124628 RCV000011174
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Acute megakaryoblastic leukemia in down syndrome Pathogenic rs1557020021, rs2062673859, rs2062673949, rs2062674122, rs2062674253, rs2062674480 RCV001293757
RCV001293759
RCV001293762
RCV001293763
RCV001293755
View all (1 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Anemia Likely pathogenic rs1602220307 RCV001003924
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Beta-thalassemia-X-linked thrombocytopenia syndrome Pathogenic; Likely pathogenic rs104894809, rs387907207, rs2062673416 RCV000011173
RCV000024620
RCV002504289
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
ANEMIA, CONGENITAL, NONSPHEROCYTIC HEMOLYTIC, 9 HPO
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ANEMIA, DIAMOND-BLACKFAN Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ANEMIA, X-LINKED, WITH OR WITHOUT NEUTROPENIA AND/OR PLATELET ABNORMALITIES CTD, Disgenet, HPO
CTD, Disgenet, HPO
CTD, Disgenet, HPO
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
BETA THALASSEMIA Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Aase Smith syndrome 2 Aase-Smith syndrome ORPHANET_DG 22706301, 24952648
★☆☆☆☆
Found in Text Mining only
Abetalipoproteinemia Abetalipoproteinemia BEFREE 28418072
★☆☆☆☆
Found in Text Mining only
Abetalipoproteinemia Abetalipoproteinemia HPO_DG
★☆☆☆☆
Found in Text Mining only
Acute Basophilic Leukemia Basophilic Leukemia BEFREE 21474671, 30599775
★☆☆☆☆
Found in Text Mining only
Acute Basophilic Leukemia Basophilic Leukemia ORPHANET_DG 21474671
★☆☆☆☆
Found in Text Mining only
Acute basophilic leukemia Basophilic Leukemia Orphanet
★☆☆☆☆
Found in Text Mining only
Acute Erythroblastic Leukemia Erythroblastic Leukemia BEFREE 19682090, 20495378, 2259631, 27010793, 28340113, 7828582, 8207977, 8443382, 8617207, 9808054
★☆☆☆☆
Found in Text Mining only
Acute leukemia Leukemia BEFREE 10360378, 12560215, 14636651, 16631466, 28340113, 9808054
★☆☆☆☆
Found in Text Mining only
Acute leukemia Leukemia HPO_DG
★☆☆☆☆
Found in Text Mining only
Acute lymphocytic leukemia Lymphocytic Leukemia BEFREE 10360378, 16631466, 28340113
★☆☆☆☆
Found in Text Mining only