Gene Gene information from NCBI Gene database.
Entrez ID 26092
Gene name Torsin 1A interacting protein 1
Gene symbol TOR1AIP1
Synonyms (NCBI Gene)
LAP1LAP1BLAP1CLGMD2Y
Chromosome 1
Chromosome location 1q25.2
Summary This gene encodes a type 2 integral membrane protein that binds A- and B-type lamins. The encoded protein localizes to the inner nuclear membrane and may be involved in maintaining the attachment of the nuclear membrane to the nuclear lamina during cell d
SNPs SNP information provided by dbSNP.
8
SNP ID Visualize variation Clinical significance Consequence
rs11581962 C>A,T Likely-pathogenic Synonymous variant, stop gained, coding sequence variant
rs201518227 C>T Likely-pathogenic Missense variant, coding sequence variant
rs750028739 GTAAGAATAG>- Likely-pathogenic Coding sequence variant, splice donor variant, intron variant
rs778326858 G>T Pathogenic Coding sequence variant, stop gained
rs879255612 G>- Pathogenic Coding sequence variant, frameshift variant
miRNA miRNA information provided by mirtarbase database.
537
miRTarBase ID miRNA Experiments Reference
MIRT024930 hsa-miR-215-5p Microarray 19074876
MIRT026145 hsa-miR-192-5p Microarray 19074876
MIRT027250 hsa-miR-101-3p Sequencing 20371350
MIRT698108 hsa-miR-224-3p HITS-CLIP 23313552
MIRT698107 hsa-miR-522-3p HITS-CLIP 23313552
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
22
GO ID Ontology Definition Evidence Reference
GO:0001671 Function ATPase activator activity IDA 23569223
GO:0001671 Function ATPase activator activity IEA
GO:0005515 Function Protein binding IPI 21044950, 22321011, 23569223, 24116158, 32814053
GO:0005521 Function Lamin binding IEA
GO:0005634 Component Nucleus IDA 24275647, 25461922
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
614512 29456 ENSG00000143337
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q5JTV8
Protein name Torsin-1A-interacting protein 1 (Lamin-associated protein 1B) (LAP1B)
Protein function Required for nuclear membrane integrity. Induces TOR1A and TOR1B ATPase activity and is required for their location on the nuclear membrane. Binds to A- and B-type lamins. Possible role in membrane attachment and assembly of the nuclear lamina.
PDB 4TVS
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF05609 LAP1C 149 583 Lamina-associated polypeptide 1C (LAP1C) Family
Tissue specificity TISSUE SPECIFICITY: Expressed in muscle, liver and kidney. {ECO:0000269|PubMed:24856141}.; TISSUE SPECIFICITY: [Isoform 1]: Major isoform present in liver, brain and heart (at protein level). Expressed at lower levels than isoform 4 in lung, kidney and sp
Sequence
Sequence length 583
Interactions View interactions
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
30
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Autosomal recessive limb-girdle muscular dystrophy type 2Y Pathogenic; Likely pathogenic rs2148468818, rs374232191, rs2148468809, rs2148468861, rs1193188647, rs900977276, rs771280075, rs112561258, rs907592735, rs201518227, rs778326858, rs1180978840, rs1571735403, rs11581962, rs1648544786
View all (4 more)
RCV001881617
RCV001939436
RCV001877950
RCV002000140
RCV001870185
View all (14 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Centronuclear myopathy Pathogenic rs2526558374 RCV004587610
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
TOR1AIP1-related disorder Likely pathogenic rs1318942147 RCV003420871
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
Adrenocortical carcinoma, hereditary Benign; Likely benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
AUTOSOMAL RECESSIVE LIMB GIRDLE MUSCULAR DYSTROPHY TYPE 2Y Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Cervical cancer Likely benign; Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Cholangiocarcinoma Benign; Likely benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Cardiomyopathies Cardiomyopathy BEFREE 25425325
★☆☆☆☆
Found in Text Mining only
Cardiomyopathies Cardiomyopathy Pubtator 25425325 Associate
★☆☆☆☆
Found in Text Mining only
Cardiomyopathy Dilated Dilated cardiomyopathy Pubtator 25425325 Associate
★☆☆☆☆
Found in Text Mining only
Cardiomyopathy, Dilated Cardiomyopathy BEFREE 27342937
★☆☆☆☆
Found in Text Mining only
Cataract Cataract Pubtator 30723199, 32055997 Associate
★☆☆☆☆
Found in Text Mining only
Cataract Nuclear Progressive Congenital cataract Pubtator 30723199 Associate
★☆☆☆☆
Found in Text Mining only
Cerebellar Diseases Cerebellar diseases Pubtator 25425325, 30723199 Associate
★☆☆☆☆
Found in Text Mining only
Congenital Abnormalities Congenital abnormalities Pubtator 32055997 Associate
★☆☆☆☆
Found in Text Mining only
Congestive heart failure Congestive Heart Failure BEFREE 27342937
★☆☆☆☆
Found in Text Mining only
Contracture Contracture Pubtator 32055997 Associate
★☆☆☆☆
Found in Text Mining only