Gene Gene information from NCBI Gene database.
Entrez ID 26090
Gene name Abhydrolase domain containing 12, lysophospholipase
Gene symbol ABHD12
Synonyms (NCBI Gene)
ABHD12ABEM46L2C20orf22PHARCdJ965G21.2hABHD12
Chromosome 20
Chromosome location 20p11.21
Summary This gene encodes an enzyme that catalyzes the hydrolysis of 2-arachidonoyl glycerol (2-AG), the main endocannabinoid lipid transmitter that acts on cannabinoid receptors, CB1 and CB2. The endocannabinoid system is involved in a wide range of physiologica
SNPs SNP information provided by dbSNP.
23
SNP ID Visualize variation Clinical significance Consequence
rs11904930 C>G,T Conflicting-interpretations-of-pathogenicity, benign, likely-benign Missense variant, coding sequence variant, 5 prime UTR variant, non coding transcript variant
rs41306784 G>A Conflicting-interpretations-of-pathogenicity, uncertain-significance Coding sequence variant, non coding transcript variant, genic downstream transcript variant, missense variant
rs146028040 C>T Conflicting-interpretations-of-pathogenicity Genic downstream transcript variant, coding sequence variant, non coding transcript variant, synonymous variant
rs188888939 G>A Conflicting-interpretations-of-pathogenicity, uncertain-significance Genic downstream transcript variant, coding sequence variant, non coding transcript variant, synonymous variant
rs267606624 G>A Pathogenic Genic downstream transcript variant, coding sequence variant, stop gained, non coding transcript variant
miRNA miRNA information provided by mirtarbase database.
95
miRTarBase ID miRNA Experiments Reference
MIRT023580 hsa-miR-1-3p Proteomics 18668040
MIRT042640 hsa-miR-423-3p CLASH 23622248
MIRT042277 hsa-miR-484 CLASH 23622248
MIRT718097 hsa-miR-4485-5p HITS-CLIP 19536157
MIRT718096 hsa-miR-1205 HITS-CLIP 19536157
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
38
GO ID Ontology Definition Evidence Reference
GO:0004620 Function Phospholipase activity IDA 30643283
GO:0004622 Function Phosphatidylcholine lysophospholipase activity IBA
GO:0004622 Function Phosphatidylcholine lysophospholipase activity IDA 25290914, 30237167
GO:0004622 Function Phosphatidylcholine lysophospholipase activity IEA
GO:0005737 Component Cytoplasm IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
613599 15868 ENSG00000100997
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q8N2K0
Protein name Lysophosphatidylserine lipase ABHD12 (EC 3.1.-.-) (2-arachidonoylglycerol hydrolase ABHD12) (Abhydrolase domain-containing protein 12) (hABHD12) (Monoacylglycerol lipase ABHD12) (EC 3.1.1.23) (Oxidized phosphatidylserine lipase ABHD12) (EC 3.1.-.-)
Protein function Lysophosphatidylserine (LPS) lipase that mediates the hydrolysis of lysophosphatidylserine, a class of signaling lipids that regulates immunological and neurological processes (PubMed:25290914, PubMed:30237167, PubMed:30420694, PubMed:30643283,
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF12146 Hydrolase_4 165 297 Serine aminopeptidase, S33 Family
Sequence
MRKRTEPVALEHERCAAAGSSSSGSAAAALDADCRLKQNLRLTGPAAAEPRCAADAGMKR
ALGRRKGVWLRLRKILFCVLGLYIAIPFLIKLCPGIQAKLIFLNFVRVPYFIDLKKPQDQ
GLNHTCNYYLQPEEDVTIGVWHTVPAVWWKNAQGKDQMWYEDALASSHPIILYLHGNAGT
RGGDHRVELYKVLSSLGYHVVTFDYRGWGDSVGTPSERGMTYDALHVFDWIKARSGDNPV
YIWGHSLGTGVATNLVRRLCERETPPDALILESPFTNIREEAKSHPFSVIYRYFPGF
DWF
FLDPITSSGIKFANDENVKHISCPLLILHAEDDPVVPFQLGRKLYSIAAPARSFRDFKVQ
FVPFHSDLGYRHKYIYKSPELPRILREFLGKSEPEHQH
Sequence length 398
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  Reactome
    Arachidonate production from DAG
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
17
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Cone dystrophy Pathogenic rs1568725951 RCV000678517
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
PHARC syndrome Pathogenic; Likely pathogenic rs868586681, rs2146035624, rs1555813914, rs397704714, rs267606624, rs587777602, rs587777603, rs2515767848, rs2515791028, rs886039872, rs1555817157, rs1555811525, rs776800006, rs1303044966, rs1555810299 RCV001782038
RCV005863538
RCV000000041
RCV000000043
RCV000000044
View all (10 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Retinal dystrophy Likely pathogenic; Pathogenic rs1555811525, rs758316679, rs2088652401, rs1300228825, rs2089115544 RCV000505023
RCV000504760
RCV001073985
RCV001074217
RCV001074221
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
ABHD12-related disorder Conflicting classifications of pathogenicity; Benign; Likely benign; Uncertain significance ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ALZHEIMER DISEASE GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Cholangiocarcinoma Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Familial cancer of breast Benign; Likely benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Ataxia Ataxia Pubtator 22938382, 34573385 Associate
★☆☆☆☆
Found in Text Mining only
Ataxias, Hereditary Ataxia GENOMICS_ENGLAND_DG 27604308
★☆☆☆☆
Found in Text Mining only
Cataract Cataract BEFREE 22938382, 23297193, 24027063, 29571850
★☆☆☆☆
Found in Text Mining only
Cataract Cataract Pubtator 22938382, 24027063, 34573385, 39826350 Associate
★☆☆☆☆
Found in Text Mining only
Cataract Cataract CLINVAR_DG
★☆☆☆☆
Found in Text Mining only
Cerebellar atrophy Cerebellar atrophy CLINVAR_DG 29571850
★☆☆☆☆
Found in Text Mining only
Cerebellar atrophy Cerebellar atrophy HPO_DG
★☆☆☆☆
Found in Text Mining only
Cone Dystrophy Cone Dystrophy CLINVAR_DG
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Congenital pes cavus Congenital Pes Cavus CLINVAR_DG 29571850
★☆☆☆☆
Found in Text Mining only
Disorder of eye Disorder Of Eye GENOMICS_ENGLAND_DG
★☆☆☆☆
Found in Text Mining only