Gene Gene information from NCBI Gene database.
Entrez ID 25953
Gene name PNKD metallo-beta-lactamase domain containing
Gene symbol PNKD
Synonyms (NCBI Gene)
BRP17DYT8FKSG19FPD1KIPP1184MR-1MR-1SMR1PDCPKND1PNKD1R1TAHCCP2
Chromosome 2
Chromosome location 2q35
Summary This gene is thought to play a role in the regulation of myofibrillogenesis. Mutations in this gene have been associated with the movement disorder paroxysmal non-kinesigenic dyskinesia. Alternative splicing results in multiple transcript variants. [provi
miRNA miRNA information provided by mirtarbase database.
569
miRTarBase ID miRNA Experiments Reference
MIRT047847 hsa-miR-30c-5p CLASH 23622248
MIRT722502 hsa-miR-181a-5p HITS-CLIP 19536157
MIRT722501 hsa-miR-181b-5p HITS-CLIP 19536157
MIRT722500 hsa-miR-181c-5p HITS-CLIP 19536157
MIRT722499 hsa-miR-181d-5p HITS-CLIP 19536157
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
22
GO ID Ontology Definition Evidence Reference
GO:0004416 Function Hydroxyacylglutathione hydrolase activity IEA
GO:0005515 Function Protein binding IPI 25066297, 25416956, 25910212, 32814053
GO:0005737 Component Cytoplasm IEA
GO:0005739 Component Mitochondrion HTP 34800366
GO:0005739 Component Mitochondrion IBA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
609023 9153 ENSG00000127838
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q8N490
Protein name Probable thioesterase PNKD (EC 3.1.2.-) (Myofibrillogenesis regulator 1) (MR-1) (Paroxysmal nonkinesiogenic dyskinesia protein) (Trans-activated by hepatitis C virus core protein 2)
Protein function Probable thioesterase that may play a role in cellular detoxification processes; it likely acts on a yet-unknown alpha-hydroxythioester substrate (Probable). In vitro, it is able to catalyze the hydrolysis of S-D-lactoyl-glutathione to form glut
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00753 Lactamase_B 145 291 Metallo-beta-lactamase superfamily Domain
PF16123 HAGH_C 292 382 Hydroxyacylglutathione hydrolase C-terminus Family
Tissue specificity TISSUE SPECIFICITY: Isoform 1 is only expressed in the brain. Isoform 2 is ubiquitously detected with highest expression in skeletal muscle and detected in myocardial myofibrils. {ECO:0000269|PubMed:15188056, ECO:0000269|PubMed:15262732, ECO:0000269|PubMe
Sequence
Sequence length 385
Interactions View interactions
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
30
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Episodic hemiplegia Likely pathogenic; Pathogenic rs121434511 RCV000414943
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Paroxysmal dyskinesia Likely pathogenic; Pathogenic rs121434511 RCV000414943
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Paroxysmal dystonia Likely pathogenic; Pathogenic rs121434511 RCV000414943
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Paroxysmal nonkinesigenic dyskinesia Likely pathogenic; Pathogenic rs121434511, rs121434512 RCV002512664
RCV001050396
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
CARCINOMA, RENAL CELL CTD
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
CARDIOVASCULAR DISEASE GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Cervical cancer Conflicting classifications of pathogenicity; Uncertain significance ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Cholangiocarcinoma Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Adenocarcinoma of large intestine Colorectal Cancer GWASCAT_DG 28960316, 29917119, 30510241, 31089142
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma of lung (disorder) Lung adenocarcinoma BEFREE 30498349
★☆☆☆☆
Found in Text Mining only
Adenoma of large intestine Colorectal adenoma GWASCAT_DG 30510241
★☆☆☆☆
Found in Text Mining only
Adrenal Gland Pheochromocytoma Adrenal Gland Pheochromocytoma BEFREE 20959442
★☆☆☆☆
Found in Text Mining only
Alopecia Alopecia BEFREE 31601134
★☆☆☆☆
Found in Text Mining only
Alopecia Areata Alopecia Areata BEFREE 31601134
★☆☆☆☆
Found in Text Mining only
Amyotrophic Lateral Sclerosis Amyotrophic Lateral Sclerosis BEFREE 11708997, 17185385
★☆☆☆☆
Found in Text Mining only
Anemia Anemia BEFREE 30067604
★☆☆☆☆
Found in Text Mining only
ANOPHTHALMIA AND PULMONARY HYPOPLASIA Syndromic microphthalmia BEFREE 23696030
★☆☆☆☆
Found in Text Mining only
Arteriosclerosis Arteriosclerosis BEFREE 29520165
★☆☆☆☆
Found in Text Mining only