Gene Gene information from NCBI Gene database.
Entrez ID 25923
Gene name Atlastin GTPase 3
Gene symbol ATL3
Synonyms (NCBI Gene)
AT3ATL-3HSN1F
Chromosome 11
Chromosome location 11q13.1
Summary This gene encodes a member of a family of dynamin-like, integral membrane GTPases. The encoded protein is required for the proper formation of the network of interconnected tubules of the endoplasmic reticulum. Mutations in this gene may be associated wit
miRNA miRNA information provided by mirtarbase database.
222
miRTarBase ID miRNA Experiments Reference
MIRT023532 hsa-miR-1-3p Proteomics 18668040
MIRT050590 hsa-miR-20a-5p CLASH 23622248
MIRT044964 hsa-miR-186-5p CLASH 23622248
MIRT676058 hsa-miR-1237-3p HITS-CLIP 23824327
MIRT676057 hsa-miR-1248 HITS-CLIP 23824327
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
28
GO ID Ontology Definition Evidence Reference
GO:0000166 Function Nucleotide binding IEA
GO:0003924 Function GTPase activity IBA
GO:0003924 Function GTPase activity IEA
GO:0005515 Function Protein binding IPI 23969831, 32075961
GO:0005525 Function GTP binding IBA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
609369 24526 ENSG00000184743
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q6DD88
Protein name Atlastin-3 (AT3) (ATL-3) (EC 3.6.5.-)
Protein function Atlastin-3 (ATL3) is a membrane-anchored GTPase that mediates the GTP-dependent fusion of endoplasmic reticulum (ER) membranes, maintaining the continuous ER network. It facilitates the formation of three-way junctions where ER tubules intersect
PDB 5VGR , 6XJO
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF02263 GBP 36 310 Guanylate-binding protein, N-terminal domain Domain
PF02841 GBP_C 312 438 Guanylate-binding protein, C-terminal domain Domain
Tissue specificity TISSUE SPECIFICITY: Expressed in the central nervous system and in dorsal root ganglia neurons. Expressed in peripheral tissues (at protein level). {ECO:0000269|PubMed:18270207, ECO:0000269|PubMed:24459106}.
Sequence
Sequence length 541
Interactions View interactions
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
13
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Neuropathy, hereditary sensory, type 1F Pathogenic rs587777108, rs1939486740 RCV000083312
RCV001200936
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
Acute myeloid leukemia Benign; Likely benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ATL3-related disorder Likely benign; Conflicting classifications of pathogenicity; Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Charcot-Marie-Tooth disease axonal type 2N Uncertain significance ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
CHARCOT-MARIE-TOOTH DISEASE, AXONAL, TYPE 2N Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Acro-Osteolysis Acrosteolysis HPO_DG
★☆☆☆☆
Found in Text Mining only
Adult T-Cell Lymphoma/Leukemia T-Cell Lymphoma/Leukemia BEFREE 1959992
★☆☆☆☆
Found in Text Mining only
Arthropathy Arthropathy HPO_DG
★☆☆☆☆
Found in Text Mining only
Hereditary Sensory and Autonomic Neuropathies Hereditary sensory and autonomic neuropathy BEFREE 29768202, 30339187, 31032711
★☆☆☆☆
Found in Text Mining only
Hereditary Sensory and Autonomic Neuropathies Hereditary sensory and autonomic neuropathy Pubtator 30339187, 34090020, 37769650 Associate
★☆☆☆☆
Found in Text Mining only
Hereditary sensory and autonomic neuropathy type 1 Sensory And Autonomic Neuropathy Orphanet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Hereditary Sensory Autonomic Neuropathy, Type 1 Hereditary sensory and autonomic neuropathy ORPHANET_DG 24459106
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Hereditary Sensory Autonomic Neuropathy, Type 1 Hereditary sensory and autonomic neuropathy BEFREE 30773365
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Hyperkeratosis Hyperkeratosis HPO_DG
★☆☆☆☆
Found in Text Mining only
Idiopathic pulmonary hypertension Pulmonary Hypertension BEFREE 25470773
★☆☆☆☆
Found in Text Mining only