Gene Gene information from NCBI Gene database.
Entrez ID 2592
Gene name Galactose-1-phosphate uridylyltransferase
Gene symbol GALT
Synonyms (NCBI Gene)
-
Chromosome 9
Chromosome location 9p13.3
Summary Galactose-1-phosphate uridyl transferase (GALT) catalyzes the second step of the Leloir pathway of galactose metabolism, namely the conversion of UDP-glucose + galactose-1-phosphate to glucose-1-phosphate + UDP-galactose. The absence of this enzyme result
SNPs SNP information provided by dbSNP.
244
SNP ID Visualize variation Clinical significance Consequence
rs2070074 A>G Other, conflicting-interpretations-of-pathogenicity, benign, pathogenic, likely-benign Missense variant, coding sequence variant
rs75391579 A>G Pathogenic Missense variant, coding sequence variant
rs111033634 C>TT Pathogenic, likely-pathogenic Coding sequence variant, frameshift variant, 5 prime UTR variant
rs111033635 A>G Pathogenic Coding sequence variant, 5 prime UTR variant, missense variant
rs111033636 G>A,C,T Conflicting-interpretations-of-pathogenicity, pathogenic Coding sequence variant, 5 prime UTR variant, missense variant
miRNA miRNA information provided by mirtarbase database.
3
miRTarBase ID miRNA Experiments Reference
MIRT004210 hsa-miR-197-3p Microarray 16822819
MIRT004220 hsa-miR-346 Microarray 16822819
MIRT030075 hsa-miR-26b-5p Microarray 19088304
Transcription factors Transcription factors information provided by TRRUST V2 database.
1
Transcription factor Regulation Reference
FOXO3 Activation 17975019
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
23
GO ID Ontology Definition Evidence Reference
GO:0005515 Function Protein binding IPI 16189514, 25416956, 25910212, 26871637, 28514442, 32296183, 33961781
GO:0005737 Component Cytoplasm IBA
GO:0005794 Component Golgi apparatus IDA 20605918
GO:0005829 Component Cytosol TAS
GO:0006011 Process UDP-alpha-D-glucose metabolic process IDA 27005423
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
606999 4135 ENSG00000213930
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
P07902
Protein name Galactose-1-phosphate uridylyltransferase (Gal-1-P uridylyltransferase) (EC 2.7.7.12) (UDP-glucose--hexose-1-phosphate uridylyltransferase)
Protein function Plays an important role in galactose metabolism.
PDB 5IN3 , 6GQD
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF01087 GalP_UDP_transf 22 196 Galactose-1-phosphate uridyl transferase, N-terminal domain Domain
PF02744 GalP_UDP_tr_C 202 370 Galactose-1-phosphate uridyl transferase, C-terminal domain Domain
Sequence
Sequence length 379
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Galactose metabolism
Amino sugar and nucleotide sugar metabolism
Metabolic pathways
Biosynthesis of nucleotide sugars
Prolactin signaling pathway
  Defective GALT can cause Galactosemia
Galactose catabolism
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
28
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Clear cell carcinoma of kidney Pathogenic rs111033667 RCV005888637
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Deficiency of UDPglucose-hexose-1-phosphate uridylyltransferase Likely pathogenic; Pathogenic rs1554709280, rs111033697, rs2132343638, rs1821187430, rs2132345163, rs111033792, rs2132341560, rs766896883, rs2132341744, rs2132344913, rs2132341442, rs2132344399, rs2132343692, rs1198705438, rs2132344222
View all (205 more)
RCV001377996
RCV001377737
RCV001378380
RCV001378101
RCV001386791
View all (244 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Galactosemia Pathogenic; Likely pathogenic rs2132341744, rs111033695, rs111033800, rs111033715, rs111033690, rs111033773, rs786204763, rs111033813, rs111033674, rs886042070, rs1473851511, rs2492865820, rs1821147877, rs1587237799, rs750226076
View all (39 more)
RCV005614680
RCV001826409
RCV001826410
RCV001831509
RCV001826412
View all (51 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
GALT-related disorder Pathogenic; Likely pathogenic rs111033695, rs111033690, rs2492864348, rs111033634, rs111033669, rs111033670, rs111033728, rs111033754, rs367543266, rs111033766, rs1554709359, rs398123179, rs398123184 RCV003398436
RCV004752682
RCV003400070
RCV003407352
RCV004730853
View all (8 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
Acute myeloid leukemia Conflicting classifications of pathogenicity ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ASTHMA GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Cervical cancer Conflicting classifications of pathogenicity ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
CLASSIC GALACTOSEMIA ClinVar, Orphanet
ClinVar, Orphanet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Anemia, Hemolytic Anemia HPO_DG
★☆☆☆☆
Found in Text Mining only
Apraxia of Phonation Apraxia HPO_DG
★☆☆☆☆
Found in Text Mining only
Apraxia, Developmental Verbal Apraxia BEFREE 11397328
★☆☆☆☆
Found in Text Mining only
Apraxias Apraxia Pubtator 11397328 Associate
★☆☆☆☆
Found in Text Mining only
Attention Deficit Disorder with Hyperactivity Attention deficit hyperactivity disorder Pubtator 33115496 Associate
★☆☆☆☆
Found in Text Mining only
Carcinoma Renal Cell Renal cell carcinoma Pubtator 26040780 Associate
★☆☆☆☆
Found in Text Mining only
Carcinoma, Ovarian Epithelial Ovarian Epithelial carcinoma BEFREE 11936817, 11949955, 12869412, 8405535, 8420678, 9714048
★☆☆☆☆
Found in Text Mining only
Cataract Cataract Pubtator 173185, 20222886, 28816213 Associate
★☆☆☆☆
Found in Text Mining only
Cataract Cataract BEFREE 18454942, 19418241
★☆☆☆☆
Found in Text Mining only
Cataract Cataract GENOMICS_ENGLAND_DG 27604308
★☆☆☆☆
Found in Text Mining only