Gene Gene information from NCBI Gene database.
Entrez ID 258010
Gene name Small VCP interacting protein
Gene symbol SVIP
Synonyms (NCBI Gene)
-
Chromosome 11
Chromosome location 11p14.3
Summary Endoplasmic reticulum-associated degradation (ERAD) is the pathway by which misfolded proteins in the endoplasmic reticulum are targeted to the proteasome for degradation. Multiple specialized proteins interact with one another during ERAD to complete thi
miRNA miRNA information provided by mirtarbase database.
292
miRTarBase ID miRNA Experiments Reference
MIRT027071 hsa-miR-103a-3p Sequencing 20371350
MIRT563716 hsa-miR-1277-5p HITS-CLIP 21572407
MIRT563715 hsa-miR-590-3p HITS-CLIP 21572407
MIRT707379 hsa-miR-4789-3p HITS-CLIP 21572407
MIRT707378 hsa-miR-369-3p HITS-CLIP 21572407
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
26
GO ID Ontology Definition Evidence Reference
GO:0000139 Component Golgi membrane IEA
GO:0005515 Function Protein binding IPI 17872946, 32296183
GO:0005764 Component Lysosome IEA
GO:0005765 Component Lysosomal membrane IEA
GO:0005783 Component Endoplasmic reticulum IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
620965 25238 ENSG00000198168
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q8NHG7
Protein name Small VCP/p97-interacting protein
Protein function Negative regulator of the ER-associated degradation pathway (ERAD) of misfolded proteins. It competes with AMFR/gp78 for binding VCP/p97, and inhibits AMFR/gp78-VCP/p97 complex formation that is required for degradation of ERAD substrates (PubMe
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF15811 SVIP 1 73 Small VCP/p97-interacting protein Family
Sequence
Sequence length 77
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Protein processing in endoplasmic reticulum   Neutrophil degranulation
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
4
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
CHRONIC KIDNEY DISEASE GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
HEARING LOSS GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
LUNG ADENOCARCINOMA GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
SENSORINEURAL HEARING LOSS GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
alpha 1-Antitrypsin Deficiency Alpha 1-Antitrypsin Deficiency BEFREE 28301499
★☆☆☆☆
Found in Text Mining only
Breast Neoplasms Breast neoplasm Pubtator 37408196 Associate
★☆☆☆☆
Found in Text Mining only
Fibrosis, Liver Liver Fibrosis BEFREE 30683843
★☆☆☆☆
Found in Text Mining only
Glioma Glioma BEFREE 28423563
★☆☆☆☆
Found in Text Mining only
Glioma Glioma Pubtator 28423563 Inhibit
★☆☆☆☆
Found in Text Mining only
Glioma Glioma Pubtator 37408196 Associate
★☆☆☆☆
Found in Text Mining only
Head and Neck Neoplasms Head and neck neoplasm Pubtator 37408196 Associate
★☆☆☆☆
Found in Text Mining only
Neoplasms Neoplasms BEFREE 28423563
★☆☆☆☆
Found in Text Mining only
Pancreatic Neoplasms Pancreatic neoplasm Pubtator 39473740 Associate
★☆☆☆☆
Found in Text Mining only
Prostatic Neoplasms Prostatic neoplasm Pubtator 28091582 Associate
★☆☆☆☆
Found in Text Mining only