Gene Gene information from NCBI Gene database.
Entrez ID 256764
Gene name WD repeat domain 72
Gene symbol WDR72
Synonyms (NCBI Gene)
AI2A3
Chromosome 15
Chromosome location 15q21.3
Summary This gene encodes a protein with eight WD-40 repeats. Mutations in this gene have been associated with amelogenesis imperfecta hypomaturation type 2A3. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Mar 2013]
SNPs SNP information provided by dbSNP.
10
SNP ID Visualize variation Clinical significance Consequence
rs143816093 C>G,T Pathogenic Coding sequence variant, stop gained, missense variant, genic upstream transcript variant, non coding transcript variant
rs267607178 G>A,C Pathogenic Genic upstream transcript variant, missense variant, coding sequence variant, non coding transcript variant, stop gained
rs557128345 G>A Pathogenic Stop gained, coding sequence variant, non coding transcript variant, genic upstream transcript variant
rs606231351 T>- Pathogenic Genic upstream transcript variant, frameshift variant, coding sequence variant, non coding transcript variant
rs606231462 AT>- Pathogenic Genic upstream transcript variant, frameshift variant, coding sequence variant, non coding transcript variant
miRNA miRNA information provided by mirtarbase database.
292
miRTarBase ID miRNA Experiments Reference
MIRT515415 hsa-miR-8485 HITS-CLIP 21572407
MIRT515414 hsa-miR-329-3p HITS-CLIP 21572407
MIRT515413 hsa-miR-362-3p HITS-CLIP 21572407
MIRT515412 hsa-miR-603 HITS-CLIP 21572407
MIRT515411 hsa-miR-4789-3p HITS-CLIP 21572407
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
5
GO ID Ontology Definition Evidence Reference
GO:0005737 Component Cytoplasm IBA
GO:0005737 Component Cytoplasm IDA 20938048
GO:0031214 Process Biomineral tissue development IEA
GO:0031410 Component Cytoplasmic vesicle IEA
GO:0072659 Process Protein localization to plasma membrane IBA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
613214 26790 ENSG00000166415
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q3MJ13
Protein name WD repeat-containing protein 72
Protein function Plays a major role in formation of tooth enamel (PubMed:19853237, PubMed:25008349). Specifically required during the maturation phase of amelogenesis for normal formation of the enamel matrix and clearance of enamel proteins. May be involved in
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00400 WD40 452 495 WD domain, G-beta repeat Repeat
PF00400 WD40 547 585 WD domain, G-beta repeat Repeat
Sequence
MRTSLQAVALWGQKAPPHSITAIMITDDQRTIVTGSQEGQLCLWNLSHELKISAKELLFG
HSASVTCLARARDFSKQPYIVSAAENGEMCVWNVTNGQCMEKATLPYRHTAICYYHCSFR
MTGEGWLLCCGEYQDVLIIDAKTLAVVHSFRSSQFPDWINCMCIVHSMRIQEDSLLVVSV
AGELKVWDLSSSINSIQEKQDVYEKESKFLESLNCQTIRFCTYTERLLLVVFSKCWKVYD
YCDFSLLLTEVSRNGQFFAGGEVIAAHRILIWTEDGHSYIYQLLNSGLSKSIYPADGRVL
KETIYPHLLCSTSVQENKEQSRPFVMGYMNERKEPFYKVLFSGEVSGRITLWHIPDVPVS
KFDGSPREIPVTATWTLQDNFDKHDTMSQSIIDYFSGLKDGAGTAVVTSSEYIPSLDKLI
CGCEDGTIIITQALNAAKARLLEGGSLVKDSPPHKVLKGHHQSVTSLLYPHGLSSKLDQS
WMLSGDLDSCVILWD
IFTEEILHKFFLEAGPVTSLLMSPEKFKLRGEQIICCVCGDHSVA
LLHLEGKSCLLHARKHLFPVRMIKWHPVENFLIVGCADDSVYIWEIETGTLERHETGERA
RIILNCCDDSQLVKSVLPIASETLKHKSIEQRSSSPYQLGPLPCPGLQVESSCKVTDAKF
CPRPFNVLPVKTKWSNVGFHILLFDLENLVELLLPTPLSDVDSSSSFYGGEVLRRAKSTV
EKKTLTLRKSKTACGPLSAEALAKPITESLAQGDNTIKFSEENDGIKRQKKMKISKKMQP
KPSRKVDASLTIDTAKLFLSCLLPWGVDKDLDYLCIKHLNILKLQGPISLGISLNEDNFS
LMLPGWDLCNSGMIKDYSGVNLFSRKVLDLSDKYTATLPNQVGIPRGLENNCDSLRESDT
IVYLLSRLFLVNKLVNMPLELACRVGSSFRMESIHNKMRGAGNDILNMSSFYSCLRNGKN
ESHVPEADLSLLKLISCWRDQSVQVTEAIQAVLLAEVQQHMKSLGKIPVNSQPVSMAENG
NCEMKQMLPKLEWTEELELQCVRNTLPLQTPVSPVKHDSNSNSANFQDVEDMPDRCALEE
SESPGEPRHHSWIAKVCPCKVS
Sequence length 1102
Interactions View interactions
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
30
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Amelogenesis imperfecta Pathogenic; Likely pathogenic rs2543070545, rs764406738, rs2542089179, rs779460257, rs770804941 RCV003313811
RCV003314736
RCV003314737
RCV004018350
RCV000604368
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Amelogenesis imperfecta hypomaturation type 2A3 Pathogenic; Likely pathogenic rs267607178, rs143816093, rs606231351, rs606231462, rs142154661, rs2542109823, rs757690372, rs756471926, rs2543065306, rs2017517553, rs1431736022, rs779460257, rs770804941, rs557128345 RCV000000255
RCV000000256
RCV000000257
RCV000148931
RCV003154853
View all (9 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Distal renal tubular acidosis Likely pathogenic; Pathogenic rs1469562355, rs2140558454 RCV001849578
RCV001849708
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Hypophosphatemic rickets Likely pathogenic; Pathogenic rs1469562355 RCV001845037
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
AMELOGENESIS IMPERFECTA HYPOMATURATION TYPE Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
AMELOGENESIS IMPERFECTA TYPE 2 GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
AMELOGENESIS IMPERFECTA, HYPOMATURATION TYPE, IIA3 CTD, Disgenet, HPO
CTD, Disgenet, HPO
CTD, Disgenet, HPO
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Amelogenesis Imperfecta, Recessive Benign; Likely benign; Uncertain significance; Conflicting classifications of pathogenicity ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Amelogenesis Imperfecta Amelogenesis imperfecta BEFREE 19853237, 20938048, 21196691, 21597265, 22243262, 25008349, 27259663, 30779877
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Amelogenesis Imperfecta Amelogenesis imperfecta Pubtator 20938048, 21196691, 21597265, 22243262, 30779877, 31959358, 35181734 Associate
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Amelogenesis Imperfecta Amelogenesis imperfecta HPO_DG
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Amelogenesis Imperfecta Amelogenesis imperfecta CLINVAR_DG
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Amelogenesis Imperfecta hypomaturation type Amelogenesis Imperfecta ORPHANET_DG 19853237
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Amelogenesis Imperfecta hypomaturation type Amelogenesis imperfecta Pubtator 19853237, 20938048, 21196691 Associate
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Amelogenesis Imperfecta Hypomaturation Type Iia3 Amelogenesis imperfecta Pubtator 30779877 Associate
★☆☆☆☆
Found in Text Mining only
Amelogenesis Imperfecta, Hypomaturation Type, Iia3 Amelogenesis imperfecta CLINVAR_DG 19853237, 30028003
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Amelogenesis Imperfecta, Hypomaturation Type, Iia3 Amelogenesis imperfecta GENOMICS_ENGLAND_DG 27259663
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Amelogenesis Imperfecta, Hypomaturation Type, Iia3 Amelogenesis imperfecta CTD_human_DG
★★☆☆☆
Found in Text Mining + Unknown/Other Associations